Hg_chrom9_TN10mRNA_18039
Organism: Heterodera glycines Gene Locus: chr9:7938805-7962885 Feature type: polypeptideProtein Sequence
Length: 1,714
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 0.868 | 1.018 | 0.282 | 0.895 | 1.301 | 0.764 | 0.729 | 0.778 | 1.206 | 0.698 | 1.304 | 1.005 | 1.043 | 1.203 | 1.142 | 1.062 | 1.344 | 0.808 | 1.064 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRRS,RKRR
|
— | — | — | — |
1-35
|
0.611
|
0.581
|
0.000
|
0.000
|
0.284
|
0.153
|
0.075
|
0.354
|
0.129
|
0.183
|
0.201
|
0.068
|
0.334
|
0.813
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002582
|
1.000
|
3.000
|
Hsc_gene_13974.t1;Hsc_gene_13974.t4;Hsc_gene_13974.t5
|
Hsc_gene_13972.t1;Hsc_gene_13972.t2;Hsc_gene_13973.t1;Hsc_gene_13974.t2;Hsc_gene_13974.t3;Hsc_gene_13974.t4;Hsc_gene_13974.t5;Hsc_gene_13974.t6;Hsc_gene_13975.t1
|
— |
Q6YHK3.2 CD109 antigen [Homo sapiens]
|
XP_020306365.1 A-macroglobulin complement component family protein, variant [Loa loa];EJD75504.1 A-macroglobulin complement component family protein, variant [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004866|GO:0005576|GO:0005615
|
GO:0008150_0.843|GO:0005575_0.730|GO:0110165_0.727|GO:0003674_0.589|GO:0065007_0.515
|
IPR001599+896-993+|IPR002890+216-307+|IPR008930+1149-1461+|IPR009048+1569-1659_1570-1658+|IPR011625+570-712_578-712+|IPR011626+1141-1458+|IPR013783+446-550_956-1075+|IPR014756+951-1004+|IPR019742+1161-1169+|IPR036595+1539-1676_1556-1665+|IPR041555+309-403+|IPR041813+1150-1458+|IPR047565+1153-1182+|IPR050473+109-1673+
|
SM01359+570-712+|SM01360+896-993+|SM01361+1570-1658+|SM01419+1153-1182+
|
PF00207+896-993+Alpha-2-macroglobulin_family|PF01835+216-307+MG2_domain|PF07677+1569-1659+A-macroglobulin_receptor_binding_domain|PF07678+1141-1458+A-macroglobulin_TED_domain|PF07703+578-712+Alpha-2-macroglobulin_bait_region_domain|PF17791+309-403+Macroglobulin_domain_MG3
|
G3DSA:1.50.10.20:FF:000001+1143-1464+CD109_isoform_1|G3DSA:2.60.40.1930:FF:000001+214-311+CD109_isoform_3
|
PTHR11412+109-1673+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-96
|
2.000
|
1-39;97-1714
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
188751.000
|
6.812
|
4.500
|
22.929
|
9.743
|
46.208
|
53.792
|
11.960
|
10.968
|
54.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
greenyellow
|
5773.494
|
13424.581
|
5223.620
|
3853.478
|
9881.336
|
14262.795
|
6709.182
|
7926.936
|
507.225
|
1897.896
|
1301.894
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.590
|
-1.938
|
-0.332
|
1.327
|
0.544
|
-1.079
|
-0.953
|
— | — | — |
2.661
|
— | — |