Hg_chrom9_TN10mRNA_18041
Organism: Heterodera glycines Gene Locus: chr9:7970331-7971311 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.583 | 0.974 | 0.476 | 0.0 | 0.785 | 1.208 | 1.434 | 1.309 | 0.698 | 1.061 | 1.587 | 0.924 | 0.145 | 0.503 | 1.389 | 1.122 | 1.03 | 1.031 | 0.0 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17057
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
ASGKGGKAKADGKVKAGGKGAKKAGGKGGKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.200
|
0.096
|
0.413
|
0.124
|
0.068
|
0.099
|
0.003
|
0.097
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013128
|
1.000
|
1.000
|
Hsc_gene_13963.t1
|
Hsc_gene_13954.t1;Hsc_gene_13963.t1;Hsc_gene_13965.t1;Hsc_gene_13969.t1;Hsc_gene_8830.t1;Hsc_gene_8830.t2
|
— |
Q0CBD2.1 Histone H2A [Aspergillus terreus NIH2624]
|
KWU46270.1 histone H2A [Rhodotorula sp. JG-1b]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.835|GO:0110165_0.832|GO:0043226_0.724|GO:0005622_0.709|GO:0043229_0.665|GO:0016020_0.663|GO:0043227_0.617|GO:0008150_0.557|GO:0043231_0.535
|
IPR002119+62-183_68-180_71-179_74-96_103-118_118-131_132-146_160-178+|IPR007125+37-149+|IPR009072+52-190_77-178+|IPR032454+152-185+
|
SM00414+62-183+
|
PF00125+37-149+Core_histone_H2A/H2B/H3/H4|PF16211+152-185+C-terminus_of_histone_H2A
|
G3DSA:1.10.20.10:FF:000008+56-190+Histone_H2A
|
PTHR23430+68-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;172-191
|
1.000
|
79-171
|
6uph_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
19961.740
|
11.227
|
21.500
|
27.225
|
4.712
|
50.262
|
49.738
|
19.895
|
7.330
|
56.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1581.090
|
35.926
|
125.200
|
434.036
|
2950.997
|
3805.733
|
747.373
|
1315.716
|
20.924
|
3370.959
|
1935.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.569
|
3.459
|
1.905
|
2.734
|
0.382
|
-2.337
|
-1.648
|
-0.668
|
-7.506
|
4.607
|
— | — | — |
No JSON data available for plots.