Hg_chrom9_TN10mRNA_18044
Organism: Heterodera glycines Gene Locus: chr9:7979029-7980433 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.305 | 0.477 | 0.339 | 1.475 | 1.177 | 0.156 | 0.984 | 0.437 | 0.886 | 0.348 | 2.122 | 1.093 | 3.342 | 0.803 | 1.03 | 1.666 | 1.143 | 0.504 | 0.868 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17060
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.391
|
0.187
|
0.014
|
0.220
|
0.625
|
0.309
|
0.289
|
0.011
|
0.204
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000776
|
5.000
|
1.000
|
Hsc_gene_18024.t1
|
Hsc_gene_18024.t1;Hsc_gene_2306.t1
|
— | — |
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.852|GO:0005575_0.744|GO:0110165_0.744|GO:0071944_0.669|GO:0016020_0.664|GO:0005886_0.651|GO:0005622_0.576|GO:0009987_0.564|GO:0043226_0.531|GO:0050896_0.530|GO:0043229_0.512|GO:0005737_0.501
|
IPR004345+217-301_219-291+
|
— |
PF03134+219-291+TB2/DP1,_HVA22_family
|
— |
PTHR12300+217-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-159
|
1.000
|
160-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
33480.080
|
4.460
|
-13.000
|
19.672
|
9.508
|
42.951
|
57.049
|
8.197
|
11.475
|
58.689
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
244.837
|
2.831
|
0.000
|
10.932
|
48.538
|
1293.545
|
11.977
|
1246.263
|
0.000
|
90.877
|
51.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.357
|
1.815
|
8.191
|
2.121
|
4.750
|
-6.744
|
— |
-6.552
|
-7.303
|
4.307
|
— | — | — |
No JSON data available for plots.