Hg_chrom9_TN10mRNA_18047
Organism: Heterodera glycines Gene Locus: chr9:7985312-7986087 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.2 | 0.554 | 0.866 | 0.547 | 0.926 | 0.611 | 0.283 | 1.19 | 0.705 | 0.858 | 1.443 | 5.135 | 0.882 | 0.458 | 3.239 | 0.454 | 1.041 | 0.962 | 0.0 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17063
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.860
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRRKKEPRKV,RKKEPRKVSYKLYVRRVLK
|
2-46
|
0.857
|
— | — | — | — |
0.000
|
— | — |
0.816
|
0.285
|
0.035
|
0.262
|
0.024
|
0.022
|
0.072
|
0.000
|
0.067
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002520
|
2.000
|
2.000
|
Hsc_gene_18023.t1;Hsc_gene_3759.t1
|
Hsc_gene_18023.t1;Hsc_gene_2307.t1;Hsc_gene_25486.t1;Hsc_gene_25490.t1;Hsc_gene_25918.t1;Hsc_gene_3759.t1;Hsc_gene_4340.t1
|
— |
Q64524.3 Histone H2B type 2-E [Mus musculus]
|
XP_041821257.1 histone H2B 1/2-like [Chelmon rostratus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.858|GO:0110165_0.843|GO:0005622_0.782|GO:0016020_0.752|GO:0043226_0.735|GO:0043229_0.725|GO:0043227_0.678|GO:0043231_0.659|GO:0005634_0.611|GO:0031974_0.570|GO:0043233_0.570|GO:0070013_0.570|GO:0031981_0.562|GO:0005654_0.532
|
IPR000558+3-101_5-100_15-33_34-54_56-73_73-86_86-99+|IPR007125+3-78+|IPR009072+1-103_4-102+
|
SM00427+3-101+
|
PF00125+3-78+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000043+1-102+Histone_H2B
|
PTHR23428+5-100+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-126
|
6jr0_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
14997.790
|
11.542
|
20.500
|
38.095
|
8.730
|
52.381
|
47.619
|
27.778
|
10.317
|
39.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
562.483
|
0.534
|
0.072
|
1.191
|
6.100
|
278.071
|
12.064
|
1552.718
|
0.000
|
1766.831
|
1009.618
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
4.031
|
2.332
|
5.513
|
-4.518
|
2.365
|
-6.863
|
-11.585
|
— |
-8.104
|
— | — |
No JSON data available for plots.