SCN Proteipedia

Hg_chrom9_TN10mRNA_18051

Organism: Heterodera glycines Gene Locus: chr9:7994139-8000516 Feature type: polypeptide

Protein Sequence

Length: 682

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.835	0.75	1.226	0.152	1.075	1.429	1.693	1.026	0.684	0.694	1.044	2.415	1.059	1.438	1.017	0.67	0.577	0.844	0.226	1.337	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17066	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RGRGGKSAGAGQGRGGGGGMGGKRGGAGGPRGGVKRAGGDFGGPASKRGGR	—	—	—	—	—	—	0.000	—	—	0.832	0.057	0.011	0.513	0.145	0.047	0.050	0.001	0.091	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013129	1.000	1.000	Hsc_gene_13960.t1	Hsc_gene_13960.t1	—	O43390.1 Heterogeneous nuclear ribonucleoprotein R [Homo sapiens]	KAH7726617.1 hnRNP-RQ splicing factor family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.901\|GO:0110165_0.901\|GO:0008150_0.865\|GO:0003674_0.810\|GO:0005622_0.754\|GO:0043226_0.747\|GO:0005488_0.743\|GO:0009987_0.737\|GO:0003676_0.736\|GO:0003723_0.736\|GO:0097159_0.736\|GO:0008152_0.713\|GO:0016020_0.712\|GO:0044238_0.696\|GO:0043229_0.682\|GO:0043170_0.658\|GO:0065007_0.646\|GO:0050789_0.617\|GO:0044237_0.614\|GO:0009058_0.604\|GO:0043227_0.604\|GO:0006139_0.600\|GO:0016070_0.586\|GO:0090304_0.586\|GO:0009059_0.578\|GO:0010467_0.578\|GO:0044249_0.578\|GO:0005737_0.577\|GO:0043231_0.577\|GO:0050794_0.558	IPR000504+223-302_224-298_225-295_304-388_305-384_306-368_401-471_402-467_403-463+\|IPR006535+181-475+\|IPR012677+198-303_304-387_392-486+\|IPR035979+194-300_304-393_383-480+\|IPR041337+93-161+	SM00360+224-298_305-384_402-467+	PF00076+225-295_306-368_403-463+RNA_recognition_motif\|PF18360+93-161+Heterogeneous_nuclear_ribonucleoprotein_Q_acidic_domain	G3DSA:3.30.70.330:FF:000023+305-387+Heterogeneous_nuclear_ribonucleoprotein_q_isoform\|G3DSA:3.30.70.330:FF:000027+393-492+Heterogeneous_nuclear_ribonucleoprotein_q_isoform	PTHR21245+27-655+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-86;577-682	1.000	87-576	6kor_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.832	74154.080	6.295	-2.000	27.126	10.704	44.135	55.865	13.930	13.196	53.079

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	2795.487	3322.064	2983.402	3919.940	4151.578	3167.262	2842.446	1607.489	1684.032	2719.412	2275.677

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.385	0.102	0.502	—	-0.376	—	-1.083	0.965	—	—	—	—	—

No JSON data available for plots.

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