Hg_chrom9_TN10mRNA_18055
Organism: Heterodera glycines Gene Locus: chr9:8020732-8022473 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.083 | 1.156 | 1.186 | 0.964 | 0.466 | 1.035 | 0.961 | 0.466 | 1.035 | 1.301 | 0.235 | 0.731 | 0.863 | 1.851 | 1.077 | 1.109 | 1.018 | 1.27 | 0.239 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17070
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.726
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.418
|
0.306
|
0.028
|
0.630
|
0.097
|
0.242
|
0.232
|
0.556
|
0.065
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013132
|
1.000
|
1.000
|
Hsc_gene_13952.t1
|
— | — |
O73944.1 Pyrrolidone-carboxylate peptidase [Pyrococcus furiosus DSM 3638]
|
KAI1721882.1 pyroglutamyl peptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0003674_0.860|GO:0008152_0.784|GO:0044238_0.759|GO:0043170_0.743|GO:0003824_0.717|GO:0019538_0.717|GO:0009056_0.703|GO:0009057_0.690|GO:0016787_0.686|GO:0030163_0.678|GO:0140096_0.676|GO:0008233_0.666
|
IPR016125+1-94_2-252+|IPR036440+1-253_1-272+
|
— |
PF01470+1-94+Pyroglutamyl_peptidase
|
— |
PTHR23402+2-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
34082.640
|
4.669
|
-6.500
|
17.081
|
7.143
|
40.062
|
59.938
|
7.764
|
9.317
|
63.665
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
brown
|
407.332
|
422.966
|
584.810
|
429.304
|
465.483
|
570.153
|
657.070
|
666.502
|
269.734
|
156.169
|
204.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.239
|
— |
-0.338
|
— |
0.308
|
0.214
|
— | — | — | — | — | — | — |
No JSON data available for plots.