Hg_chrom9_TN10mRNA_18056
Organism: Heterodera glycines Gene Locus: chr9:8022887-8027864 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.27 | 0.627 | 1.585 | 0.647 | 1.105 | 0.393 | 1.94 | 1.533 | 1.204 | 0.849 | 1.437 | 1.956 | 1.133 | 1.202 | 0.985 | 0.824 | 0.849 | 1.437 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17071
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRAIHRFCRPLLAQQRRRA
|
16-40
|
0.998
|
1-32
|
0.996
|
— | — |
0.000
|
— | — |
0.172
|
0.612
|
0.192
|
0.272
|
0.133
|
0.063
|
0.113
|
0.048
|
0.093
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013133
|
1.000
|
1.000
|
Hsc_gene_13950.t1
|
Hsc_gene_13950.t1;Hsc_gene_13951.t1
|
— |
I1RZ92.1 Isopentenyl-diphosphate delta-isomerase IDI1 [Fusarium graminearum PH-1]
|
KAI1721884.1 NUDIX domain-containing protein [Ditylenchus destructor]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004452|GO:0005787|GO:0006465|GO:0008299|GO:0016020
|
GO:0005575_0.839|GO:0110165_0.839|GO:0008150_0.787|GO:0016020_0.759|GO:0005622_0.728|GO:0005737_0.687|GO:0043226_0.686|GO:0043227_0.670|GO:0043229_0.669|GO:0043231_0.659|GO:0009987_0.565
|
IPR000086+93-236_94-233+|IPR007653+557-689+|IPR011876+67-236_70-236+|IPR015797+68-247+
|
— |
PF00293+94-233+NUDIX_domain|PF04573+557-689+Signal_peptidase_subunit
|
— |
PTHR10885+62-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-696
|
2i6k_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
80360.580
|
9.095
|
42.500
|
22.701
|
15.661
|
44.397
|
55.603
|
15.374
|
7.328
|
46.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
2717.921
|
2775.633
|
2874.331
|
3396.938
|
3368.789
|
3363.219
|
2535.157
|
2727.796
|
3887.717
|
1084.418
|
2285.832
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.178
|
0.154
|
0.349
|
— | — |
-0.398
|
-0.405
|
— |
1.732
|
— | — | — | — |
No JSON data available for plots.