Hg_chrom9_TN10mRNA_18061
Organism: Heterodera glycines Gene Locus: chr9:8039945-8042455 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 1.927 | 1.399 | 0.408 | 1.479 | 1.214 | 0.282 | 0.888 | 1.709 | 0.96 | 1.255 | 1.74 | 1.151 | 0.341 | 0.725 | 0.761 | 0.776 | 1.076 | 0.91 | 0.87 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17075
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.288
|
0.028
|
0.668
|
0.128
|
0.206
|
0.152
|
0.079
|
0.071
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013135
|
1.000
|
1.000
|
Hsc_gene_13944.t1
|
Hsc_gene_13944.t1
|
— |
Q9D0B6.1 Protein PBDC1 [Mus musculus]
|
KAI1718063.1 polysaccharide biosynthesis domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.900|GO:0110165_0.899|GO:0005622_0.856|GO:0005737_0.815|GO:0008150_0.588|GO:0016020_0.529|GO:0043226_0.526|GO:0009987_0.523|GO:0003674_0.505|GO:0043229_0.501
|
IPR008476+13-148+|IPR023139+17-145+
|
— |
PF04669+21-143+PBDC1_protein
|
— |
PTHR13410+13-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-169
|
1.000
|
1-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
19422.950
|
4.681
|
-6.500
|
30.178
|
10.059
|
53.254
|
46.746
|
13.609
|
16.568
|
46.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
398.859
|
232.862
|
243.918
|
339.848
|
464.080
|
452.428
|
522.245
|
281.998
|
537.311
|
390.506
|
453.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.408
|
0.588
|
0.418
|
— |
0.218
|
-0.787
|
1.032
|
— | — | — | — | — |
No JSON data available for plots.