Hg_chrom9_TN10mRNA_18065
Organism: Heterodera glycines Gene Locus: chr9:8058430-8066535 Feature type: polypeptideProtein Sequence
Length: 649
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 1.254 | 0.896 | 0.266 | 0.719 | 0.711 | 1.009 | 1.387 | 1.198 | 0.958 | 0.654 | 1.45 | 1.07 | 0.978 | 1.101 | 1.013 | 1.313 | 1.027 | 1.185 | 0.906 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17079
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— |
KRSR
|
49-85
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.137
|
0.037
|
0.012
|
0.189
|
0.539
|
0.878
|
0.695
|
0.013
|
0.477
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001653
|
3.000
|
1.000
|
Hsc_gene_13941.t1
|
Hsc_gene_13941.t1
|
— |
P0DPU3.1 Scoloptoxin SSD14 [Scolopendra dehaani]
|
KAI1721853.1 gamma-glutamyltranspeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0036374
|
GO:0005575_0.848|GO:0110165_0.844|GO:0008150_0.723|GO:0016020_0.689|GO:0003674_0.651|GO:0009987_0.587|GO:0003824_0.551|GO:0008152_0.523
|
IPR000101+72-641_115-639+|IPR029055+110-640+|IPR043137+455-649+|IPR043138+347-453+
|
— |
PF01019+127-640+Gamma-glutamyltranspeptidase
|
G3DSA:1.10.246.130:FF:000005+347-452+Gamma-glutamyltranspeptidase_1,_putative|G3DSA:3.60.20.40:FF:000006+456-649+Protein_CBG05566
|
PTHR11686+72-641+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;643-649
|
1.000
|
55-642
|
4gdx_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
70526.760
|
8.318
|
12.000
|
21.726
|
11.248
|
44.992
|
55.008
|
12.481
|
9.245
|
57.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1539.823
|
382.841
|
1254.227
|
1534.335
|
1741.038
|
3400.376
|
1745.266
|
427.353
|
809.105
|
2197.860
|
1602.679
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.483
|
1.866
|
0.399
|
0.150
|
0.980
|
-0.951
|
-3.102
|
2.175
|
— | — | — | — | — |
No JSON data available for plots.