Hg_chrom9_TN10mRNA_18066
Organism: Heterodera glycines Gene Locus: chr9:8067494-8068881 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.287 | 1.144 | 1.043 | 0.283 | 1.844 | 1.051 | 0.293 | 0.205 | 1.002 | 1.44 | 0.994 | 2.17 | 0.455 | 0.631 | 1.087 | 0.761 | 0.941 | 1.18 | 0.631 | 1.205 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17080
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRYDDMVEAMKKLIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.501
|
0.324
|
0.050
|
0.713
|
0.110
|
0.189
|
0.180
|
0.007
|
0.141
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005017
|
2.000
|
1.000
|
Hsc_gene_13956.t1
|
Hsc_gene_13940.t1;Hsc_gene_13956.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0005575_0.836|GO:0110165_0.829|GO:0009987_0.823|GO:0003674_0.765|GO:0005622_0.737|GO:0005488_0.715|GO:0005737_0.660|GO:0005515_0.646|GO:0065007_0.638|GO:0016020_0.635|GO:0051179_0.633|GO:0043226_0.625|GO:0050789_0.600|GO:0050794_0.553|GO:0043227_0.529|GO:0050896_0.521|GO:0051641_0.515
|
IPR000308+2-243_8-237_40-69_89-113_120-142_155-181_182-208_209-238+|IPR023410+8-244_15-235+|IPR036815+1-242_8-237+
|
SM00101+8-244+
|
PF00244+15-235+14-3-3_protein
|
— |
PTHR18860+8-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
224-244
|
1.000
|
1-223
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
27620.470
|
4.478
|
-11.500
|
29.098
|
6.967
|
49.180
|
50.820
|
12.295
|
16.803
|
47.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
940.834
|
14.750
|
8.508
|
31.933
|
124.085
|
2470.000
|
36.900
|
3153.662
|
1.382
|
1925.173
|
1100.691
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.033
|
0.977
|
2.025
|
1.930
|
4.328
|
-6.056
|
— |
-6.271
|
-10.656
|
4.860
|
— | — | — |
No JSON data available for plots.