Hg_chrom9_TN10mRNA_18067
Organism: Heterodera glycines Gene Locus: chr9:8070335-8073522 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.301 | 1.931 | 0.722 | 0.871 | 0.842 | 0.926 | 0.903 | 0.722 | 0.882 | 0.634 | 1.313 | 1.699 | 0.301 | 0.903 | 1.842 | 0.825 | 0.947 | 0.93 | 0.555 | 0.849 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17081
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,RRIKRRT
|
1-25
|
0.963
|
— | — | — | — |
0.203
|
— | — |
0.657
|
0.158
|
0.036
|
0.332
|
0.050
|
0.018
|
0.089
|
0.004
|
0.187
|
0.465
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013138
|
1.000
|
1.000
|
Hsc_gene_13939.t1
|
Hsc_gene_13939.t1
|
— | — |
KAF7638773.1 Costars domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0035025
|
— |
IPR026111+166-261+|IPR027817+210-261+|IPR038095+203-263+
|
— |
PF14705+210-261+Costars
|
— |
PTHR22739+166-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-241
|
2.000
|
1-37;242-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
30493.670
|
10.622
|
26.000
|
28.159
|
6.137
|
51.625
|
48.375
|
19.134
|
9.025
|
55.957
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1041.482
|
161.718
|
251.846
|
417.672
|
239.792
|
40.481
|
57.031
|
194.437
|
41.446
|
4014.280
|
2311.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.410
|
1.232
|
0.838
|
-0.831
|
-2.552
|
0.506
|
2.158
|
-1.626
|
— | — | — | — | — |
No JSON data available for plots.