Hg_chrom9_TN10mRNA_18070
Organism: Heterodera glycines Gene Locus: chr9:8078617-8083184 Feature type: polypeptideProtein Sequence
Length: 604
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.251 | 1.001 | 1.054 | 0.742 | 0.966 | 1.189 | 0.729 | 0.993 | 0.699 | 1.208 | 0.878 | 1.461 | 1.242 | 1.114 | 1.689 | 0.946 | 1.086 | 0.702 | 0.382 | 0.341 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNNKNNDSNGMKAREK,KRIMQCLEVQESEHKKLKA,KAREKSWAKRAKNERRGALKELRKGAKGMANAYADRQRKVRRERDEKTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.837
|
0.078
|
0.034
|
0.219
|
0.086
|
0.066
|
0.080
|
0.004
|
0.090
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000724
|
4.000
|
2.000
|
Hsc_gene_13938.t1;Hsc_gene_13938.t2
|
— | — | — |
KAH7720101.1 Protein Y48G1A.4 [Aphelenchus avenae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032040
|
GO:0005575_0.941|GO:0110165_0.941|GO:0003674_0.881|GO:0016020_0.869|GO:0005622_0.860|GO:0005488_0.837|GO:0043226_0.831|GO:0043229_0.816|GO:0043227_0.762|GO:0005515_0.760|GO:0043231_0.751|GO:0097159_0.737|GO:0003676_0.715|GO:0043228_0.689|GO:0043232_0.689|GO:0003723_0.688|GO:0019899_0.685|GO:0005634_0.658|GO:0031974_0.628|GO:0031981_0.628|GO:0043233_0.628|GO:0070013_0.628|GO:0005654_0.590|GO:0005730_0.559
|
IPR007276+183-603_204-595+
|
— |
PF04147+204-595+Nop14-like_family
|
— |
PTHR23183+183-603+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-162;476-604
|
1.000
|
163-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
66737.820
|
9.392
|
21.000
|
27.649
|
8.113
|
49.834
|
50.166
|
16.060
|
11.589
|
52.815
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1435.730
|
970.266
|
640.103
|
836.677
|
975.089
|
772.870
|
1105.637
|
518.735
|
416.986
|
3786.315
|
2342.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.830
|
-0.351
|
0.495
|
0.189
|
-0.321
|
0.526
|
-0.676
|
1.231
|
— | — | — | — | — |
No JSON data available for plots.