Hg_chrom9_TN10mRNA_18078
Organism: Heterodera glycines Gene Locus: chr9:8111724-8114805 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.547 | 1.212 | 0.676 | 0.915 | 1.911 | 0.7 | 1.176 | 1.046 | 1.696 | 0.594 | 0.692 | 1.416 | 0.603 | 1.04 | 1.737 | 0.321 | 0.951 | 0.302 | 1.038 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17090
|
— | — |
0.889
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.350
|
0.348
|
0.021
|
0.547
|
0.148
|
0.179
|
0.177
|
0.018
|
0.374
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003715
|
2.000
|
1.000
|
Hsc_gene_13931.t1
|
— | — |
Q19532.2 Sorting nexin-17 homolog [Caenorhabditis elegans]
|
KAI1730401.1 PX domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0035091
|
GO:0005575_0.913|GO:0110165_0.756|GO:0008150_0.750|GO:0005622_0.704|GO:0009987_0.685|GO:0016020_0.671|GO:0043226_0.645|GO:0043229_0.636|GO:0005737_0.633|GO:0043227_0.605|GO:0043231_0.595|GO:0071944_0.555|GO:0051179_0.554|GO:0051234_0.541|GO:0006810_0.535|GO:0005886_0.534
|
IPR011993+54-159+|IPR037831+3-163+|IPR040842+53-155+|IPR048767+3-46+
|
— |
PF18116+53-155+Sorting_Nexin_17_FERM_C-terminal_domain|PF21271+3-46+Sortin_nexin_17/31,_FERM_domain,_F2_lobe
|
— |
PTHR12431+3-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
28338.010
|
5.114
|
-5.000
|
23.529
|
11.373
|
47.451
|
52.549
|
11.373
|
12.157
|
48.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
965.987
|
2993.470
|
1384.791
|
806.360
|
600.180
|
559.080
|
850.187
|
900.068
|
470.795
|
837.796
|
680.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.342
|
-2.030
|
-0.672
|
-0.458
|
— |
0.615
|
0.582
|
— | — | — | — | — | — |
No JSON data available for plots.