Hg_chrom9_TN10mRNA_18079
Organism: Heterodera glycines Gene Locus: chr9:8116066-8117443 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.98 | 1.533 | 0.733 | 0.379 | 1.221 | 1.691 | 0.785 | 0.733 | 1.058 | 0.792 | 0.333 | 1.077 | 1.119 | 1.972 | 2.243 | 0.628 | 1.261 | 0.555 | 0.564 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17091
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
GRRKNASRGRNRQRHRRRKGRSNKRA
|
14-36
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.613
|
0.098
|
0.001
|
0.748
|
0.095
|
0.030
|
0.078
|
0.030
|
0.087
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001417
|
4.000
|
1.000
|
Hsc_gene_13912.t1
|
Hsc_gene_13892.t1;Hsc_gene_13912.t1
|
— |
P34477.1 Probable ubiquitin-conjugating enzyme E2 7 [Caenorhabditis elegans]
|
KAI3412015.1 ubiquitin-conjugating enzyme E2 G1 [Globodera pallida]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.913|GO:0005575_0.806|GO:0003674_0.790|GO:0110165_0.781|GO:0008152_0.731|GO:0043170_0.731|GO:0044238_0.711|GO:0019538_0.675|GO:0005622_0.662|GO:0009987_0.643|GO:0003824_0.610|GO:0140096_0.597|GO:0016740_0.593|GO:0016746_0.587|GO:0004842_0.584|GO:0016755_0.584|GO:0019787_0.584|GO:0016020_0.566|GO:0043226_0.527|GO:0009056_0.507|GO:0005737_0.504
|
IPR000608+12-177_15-160_26-167+|IPR016135+10-176_15-169+|IPR023313+87-102+|IPR050113+14-173+
|
SM00212+15-173+
|
PF00179+26-167+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+14-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;146-273
|
1.000
|
10-145
|
1pzv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
30661.320
|
9.559
|
7.000
|
26.007
|
7.692
|
51.282
|
48.718
|
14.652
|
11.355
|
52.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
651.418
|
1.514
|
5.906
|
7.834
|
51.283
|
2553.961
|
17.668
|
4281.329
|
0.000
|
255.141
|
145.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.719
|
2.226
|
— |
2.676
|
5.651
|
-7.165
|
0.632
|
-7.772
|
— | — | — | — |
7.195
|
No JSON data available for plots.