Hg_chrom9_TN10mRNA_18082
Organism: Heterodera glycines Gene Locus: chr9:8121250-8122200 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 0.733 | 1.474 | 0.621 | 0.826 | 1.386 | 0.644 | 1.802 | 1.502 | 0.791 | 0.614 | 1.06 | 1.877 | 1.386 | 1.839 | 0.515 | 0.591 | 0.751 | 0.693 | 1.06 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17093
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.532
|
0.086
|
0.076
|
0.711
|
0.075
|
0.099
|
0.069
|
0.003
|
0.108
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000188
|
10.000
|
1.000
|
Hsc_gene_12385.t1
|
— | — |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF8385320.1 gsp-4 [Pristionchus pacificus]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.821|GO:0005575_0.759|GO:0009987_0.754|GO:0110165_0.753|GO:0003674_0.744|GO:0005622_0.692|GO:0003824_0.613|GO:0016020_0.604|GO:0005737_0.599|GO:0065007_0.590|GO:0050789_0.571|GO:0050794_0.557|GO:0043226_0.544|GO:0016787_0.532|GO:0043229_0.531|GO:0140096_0.518|GO:0016788_0.511
|
IPR004843+89-203+|IPR006186+59-222_87-114_116-143_149-173_150-155+|IPR029052+33-203_59-202+|IPR050341+48-202+
|
SM00156+59-222+
|
PF00149+89-203+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+48-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
206-222
|
1.000
|
1-205
|
1wao_4
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
25538.960
|
7.449
|
4.000
|
29.730
|
14.865
|
45.495
|
54.505
|
16.667
|
13.063
|
47.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
620.506
|
4.354
|
9.752
|
27.554
|
47.367
|
1146.628
|
23.220
|
2345.201
|
0.000
|
1363.187
|
778.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.523
|
1.616
|
0.750
|
4.611
|
-5.616
|
0.920
|
-6.512
|
-9.113
|
5.641
|
— | — | — |
No JSON data available for plots.