Hg_chrom9_TN10mRNA_18083
Organism: Heterodera glycines Gene Locus: chr9:8125117-8130028 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.191 | 0.931 | 0.651 | 0.898 | 1.313 | 0.674 | 2.426 | 1.497 | 1.275 | 0.368 | 0.793 | 1.348 | 1.037 | 1.1 | 1.463 | 0.795 | 0.858 | 0.622 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17094
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.713
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.189
|
0.025
|
0.003
|
0.182
|
0.173
|
0.279
|
0.380
|
0.012
|
0.745
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013140
|
1.000
|
1.000
|
Hsc_gene_13827.t1
|
Hsc_gene_13827.t1
|
— |
Q96LD1.1 Zeta-sarcoglycan [Homo sapiens]
|
KAI1727619.1 sarcoglycan complex subunit protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016012|GO:0016020
|
GO:0008150_0.954|GO:0005575_0.823|GO:0110165_0.817|GO:0071944_0.757|GO:0016020_0.754|GO:0005886_0.741|GO:0009987_0.672|GO:0032502_0.545|GO:0048856_0.545|GO:0016043_0.525|GO:0071840_0.525
|
IPR006875+113-361+|IPR039972+97-371+
|
— |
PF04790+113-361+Sarcoglycan_complex_subunit_protein
|
— |
PTHR12939+97-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51
|
1.000
|
52-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
40973.130
|
6.406
|
-1.000
|
23.181
|
12.129
|
48.518
|
51.482
|
12.668
|
10.512
|
52.022
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
red
|
219.636
|
113.600
|
327.435
|
170.342
|
104.617
|
206.596
|
188.747
|
618.867
|
5.174
|
308.200
|
178.332
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.299
|
0.448
|
-0.834
|
-0.735
|
0.996
|
— |
1.479
|
-1.572
|
-6.048
|
5.290
|
— | — | — |
No JSON data available for plots.