Hg_chrom9_TN10mRNA_18084
Organism: Heterodera glycines Gene Locus: chr9:8130396-8132672 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.205 | 1.702 | 0.499 | 1.051 | 1.118 | 3.283 | 0.472 | 2.591 | 0.678 | 0.989 | 1.016 | 1.255 | 1.186 | 0.469 | 1.12 | 0.566 | 0.9 | 0.785 | 0.469 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKITSKTAKRVRK.
|
— | — | — | — | — | — |
0.000
|
— | — |
0.816
|
0.089
|
0.009
|
0.440
|
0.089
|
0.054
|
0.052
|
0.012
|
0.091
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013141
|
1.000
|
1.000
|
Hsc_gene_13829.t1
|
— | — | — |
KAI1728290.1 zinc finger-containing protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0005575_0.914|GO:0110165_0.914|GO:0009987_0.910|GO:0032502_0.827|GO:0048856_0.827|GO:0032501_0.825|GO:0030154_0.787|GO:0048869_0.787|GO:0007275_0.786|GO:0048731_0.769|GO:0048468_0.750|GO:0007399_0.737|GO:0022008_0.726|GO:0048699_0.719|GO:0030182_0.716|GO:0048666_0.703|GO:0005622_0.608|GO:0065007_0.568|GO:0050789_0.564|GO:0050794_0.561|GO:0043226_0.552|GO:0016020_0.543|GO:0043229_0.536
|
IPR018482+59-326_68-327+|IPR044069+289-328+
|
— |
PF10146+68-327+Zinc_finger-containing_protein
|
— |
PTHR31058+59-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-50
|
1.000
|
51-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
37432.150
|
8.973
|
17.500
|
26.829
|
11.280
|
56.402
|
43.598
|
17.378
|
9.451
|
44.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
63.922
|
16.342
|
18.287
|
27.355
|
21.366
|
94.683
|
43.025
|
476.437
|
0.514
|
17.711
|
10.341
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.691
|
— |
2.164
|
-1.127
|
2.232
|
-3.328
|
— |
5.147
|
— | — | — |
No JSON data available for plots.