Hg_chrom9_TN10mRNA_18089
Organism: Heterodera glycines Gene Locus: chr9:8159740-8170018 Feature type: polypeptideProtein Sequence
Length: 1,358
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.891 | 1.031 | 0.584 | 0.785 | 1.492 | 0.622 | 1.694 | 0.835 | 1.433 | 0.536 | 1.256 | 1.698 | 0.991 | 1.593 | 1.157 | 0.724 | 0.948 | 0.963 | 0.455 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17100
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-36
|
— |
0.578
|
— |
1.000
|
0.160
|
0.381
|
0.020
|
0.230
|
0.468
|
0.172
|
0.379
|
0.047
|
0.255
|
0.323
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013145
|
1.000
|
1.000
|
Hsc_gene_13835.t1
|
Hsc_gene_13834.t1;Hsc_gene_13835.t1
|
— |
Q6PHS9.1 Voltage-dependent calcium channel subunit alpha-2/delta-2 [Mus musculus]
|
QRX85585.1 voltage-dependent calcium channel unc-36 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.884|GO:0005575_0.795|GO:0110165_0.788|GO:0009987_0.755|GO:0016020_0.740|GO:0071944_0.693|GO:0005886_0.687|GO:0003674_0.650|GO:0051179_0.625|GO:0051234_0.618|GO:0006810_0.614|GO:0006811_0.542|GO:0006812_0.534|GO:0030001_0.534|GO:0006816_0.521|GO:0065007_0.501
|
IPR013608+166-241+|IPR036465+267-433+|IPR051173+48-1308+
|
— |
PF08399+166-241+VWA_N-terminal
|
— |
PTHR10166+48-1308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
152858.160
|
8.518
|
36.000
|
25.110
|
12.297
|
47.275
|
52.725
|
14.728
|
10.383
|
49.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
644.550
|
2192.808
|
1387.893
|
736.853
|
228.407
|
129.404
|
140.494
|
511.411
|
195.883
|
675.269
|
469.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.888
|
-1.710
|
-0.805
|
-1.722
|
-0.805
|
— |
1.881
|
-1.723
|
— | — | — | — | — |