Hg_chrom9_TN10mRNA_18090
Organism: Heterodera glycines Gene Locus: chr9:8170571-8174315 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 0.638 | 0.784 | 0.541 | 0.85 | 1.207 | 0.7 | 1.373 | 1.22 | 1.166 | 0.535 | 2.768 | 1.525 | 0.905 | 1.12 | 1.737 | 1.35 | 0.951 | 0.302 | 0.923 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17101
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.697
|
0.034
|
0.231
|
0.750
|
0.081
|
0.341
|
0.046
|
0.179
|
0.369
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013146
|
1.000
|
1.000
|
Hsc_gene_13836.t1
|
Hsc_gene_13836.t1
|
— |
G5EC21.1 Protein qua-1 [Caenorhabditis elegans]
|
KAH7693341.1 qua-1 protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007267|GO:0007275|GO:0016539|GO:0016540
|
GO:0008150_0.936|GO:0005575_0.801|GO:0110165_0.792|GO:0032501_0.707|GO:0032502_0.684|GO:0048856_0.684|GO:0007275_0.665|GO:0009987_0.655|GO:0048731_0.653|GO:0065007_0.623|GO:0050789_0.601|GO:0050794_0.587|GO:0048513_0.553|GO:0071944_0.503
|
IPR001657+104-114_175-189_191-214+|IPR001767+37-234+|IPR003587+36-151+|IPR006141+38-112+|IPR036844+38-197+|IPR052140+4-242+
|
SM00306+36-151+
|
PF01079+37-234+Hint_module
|
— |
PTHR46706+4-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
28494.540
|
7.094
|
2.500
|
21.176
|
11.765
|
49.020
|
50.980
|
11.765
|
9.412
|
50.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
256.247
|
26.130
|
13.957
|
15.607
|
41.342
|
127.076
|
59.135
|
95.496
|
20.732
|
963.503
|
559.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.140
|
-0.881
|
— |
1.375
|
1.636
|
-1.095
|
— | — | — | — | — | — | — |
No JSON data available for plots.