Hg_chrom9_TN10mRNA_18091
Organism: Heterodera glycines Gene Locus: chr9:8177165-8187641 Feature type: polypeptideProtein Sequence
Length: 2,902
(Signal peptide: 1-39)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.955 | 0.652 | 0.119 | 2.332 | 0.751 | 1.637 | 0.241 | 1.21 | 0.643 | 2.417 | 0.345 | 0.086 | 0.464 | 0.956 | 0.605 | 1.672 | 0.35 | 0.133 | 0.091 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17102
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKEKAILEEIQLMKEKTK,KKEKAILEEIQLKKEKTK,RKEEEEKESKIQKEKEQKR,KREEETNKKRGKDRRERKK,KKEKAILEEIQLKKKKTKL,KKKKTKLALRKTQPKKEKA,KKEKTKLALEEIQLKKEKT,KKKKTKLTLEEIQLKKEKT,KKKTKLTLEEIQLKKEKTK,KKEKTKLAMEEIQLKKEKT,KKEKTKLAPEEIQPKKEKT,KKEKTKLALEEIQLMKKKT,KKKTKLALEEIQLKKKKTK,KKTKLALEEIQLKKKKTKL,KKKTKLALRKTQPNREKTK,KKKKTKLALEEIQLKKEKT,KKKTKLALEEIQLKKEKTK,KKEKTKLAMEEIQLKKKKT,KKKKTKLAPEEIQPKKEKT,KKKTKLAPEEIQPKKEKTK,KKEKTKLALEEIQLKKKKT,KKKKTKLAPEEIQLKKEKT,KKKTKLAPEEIQLKKEKTK,KKEKTKLAPEETQPKKEKT,KKEKTKLAPEEIQPKKEKAIPEKTQPKKEKTKLA
|
— | — | — | — |
1-39
|
— |
0.621
|
— |
0.000
|
0.370
|
0.031
|
0.019
|
0.501
|
0.020
|
0.057
|
0.031
|
0.003
|
0.290
|
0.358
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013147
|
1.000
|
1.000
|
Hsc_gene_13838.t1
|
Hsc_gene_13838.t1
|
— |
G5EC21.1 Protein qua-1 [Caenorhabditis elegans]
|
KAI1711869.1 hint module domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.943|GO:0110165_0.941|GO:0008150_0.939|GO:0032502_0.836|GO:0048856_0.836|GO:0032501_0.799|GO:0007275_0.777|GO:0071944_0.776|GO:0048731_0.766|GO:0048513_0.735|GO:0009653_0.722|GO:0022414_0.709|GO:0003006_0.705|GO:0061458_0.698|GO:0048608_0.692|GO:0009791_0.691|GO:0007423_0.684|GO:0009887_0.684|GO:0002164_0.683|GO:0090596_0.678|GO:0002119_0.677|GO:0007548_0.676|GO:0018996_0.670|GO:0030539_0.670|GO:0035112_0.670|GO:0042303_0.670|GO:0046661_0.670|GO:0048806_0.670|GO:0048808_0.670|GO:0090597_0.670|GO:0090598_0.670|GO:0030312_0.587|GO:0031012_0.566|GO:0062023_0.552|GO:0060102_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
221-1310;1383-2902
|
2.000
|
1-220;1311-1382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
313559.960
|
10.075
|
96.000
|
38.697
|
1.275
|
64.473
|
35.527
|
21.123
|
17.574
|
50.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
451.514
|
40.075
|
18.457
|
6.515
|
13.571
|
96.561
|
13.593
|
49.550
|
17.968
|
1872.525
|
1077.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.349
|
-2.755
|
-1.390
|
1.028
|
2.839
|
-2.818
|
-1.073
|
-1.720
|
-6.822
|
— |
-6.656
|
— | — |