Hg_chrom9_TN10mRNA_18092
Organism: Heterodera glycines Gene Locus: chr9:8192988-8202221 Feature type: polypeptideProtein Sequence
Length: 736
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 0.758 | 0.568 | 0.234 | 1.449 | 1.219 | 0.566 | 1.223 | 1.117 | 1.487 | 0.638 | 1.758 | 1.472 | 1.097 | 2.024 | 1.184 | 0.735 | 0.803 | 0.732 | 0.32 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17103
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
RPFRQEKRRRRKR,RRTTEWSRKMKRMGR,RKLRRIRHFFALWRRREGR,RRIRHFFALWRRREGRRKR,RRREGRRKRKELMGMKQRR,RREGRRKRKELMGMKQRRR,RRKRKELMGMKQRRRKRAM,RRRKRAMERRTTEWSRKMK,RRKRAMERRTTEWSRKMKR,RKRAMERRTTEWSRKMKRM
|
30-50
|
1.000
|
— | — | — |
0.647
|
0.080
|
0.000
|
— |
0.323
|
0.227
|
0.018
|
0.071
|
0.132
|
0.045
|
0.131
|
0.049
|
0.122
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013148
|
1.000
|
1.000
|
Hsc_gene_13839.t1
|
Hsc_gene_13839.t1;Hsc_gene_13841.t1
|
— | — |
KAI1716694.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+218-396+
|
— |
PF04870+218-396+Moulting_cycle
|
— |
PTHR21523+107-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-220;476-534;710-736
|
3.000
|
1-166;221-475;535-709
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
83882.440
|
10.203
|
26.000
|
28.397
|
9.783
|
49.185
|
50.815
|
16.576
|
11.821
|
43.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
205.518
|
133.275
|
81.067
|
119.033
|
195.710
|
167.696
|
127.415
|
166.989
|
16.197
|
515.301
|
301.399
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.947
|
-0.301
|
0.663
|
0.683
|
— |
-0.386
|
— | — |
-5.107
|
— | — | — | — |