Hg_chrom9_TN10mRNA_18093
Organism: Heterodera glycines Gene Locus: chr9:8202372-8208536 Feature type: polypeptideProtein Sequence
Length: 798
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 0.991 | 0.661 | 0.475 | 1.295 | 2.892 | 0.418 | 1.253 | 0.78 | 0.931 | 1.177 | 1.179 | 0.383 | 1.325 | 0.972 | 1.11 | 1.15 | 1.101 | 0.289 | 0.405 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17104
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRK,RQPKRAK,KRRMVEHETGMKRKVKE,KRMQQRLLLFSTEKRKLE,KKAEIEQLRAELAKPKQR,RRKELDKALAFLGVRQPKR
|
— | — |
92-112
|
0.954
|
— | — |
0.000
|
— | — |
0.645
|
0.088
|
0.005
|
0.520
|
0.038
|
0.097
|
0.107
|
0.011
|
0.101
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013149
|
1.000
|
1.000
|
Hsc_gene_13843.t1
|
Hsc_gene_13843.t1
|
— | — | — |
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-101;276-798
|
1.000
|
102-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
88648.870
|
8.762
|
19.000
|
26.441
|
5.639
|
56.767
|
43.233
|
15.038
|
11.404
|
50.376
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
963.746
|
789.254
|
833.876
|
810.479
|
973.111
|
785.917
|
1107.654
|
680.889
|
1203.737
|
1070.646
|
1127.685
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.150
|
— | — |
0.233
|
-0.294
|
0.506
|
-0.313
|
0.846
|
— | — | — | — | — |
No JSON data available for plots.