Hg_chrom9_TN10mRNA_18096
Organism: Heterodera glycines Gene Locus: chr9:8222886-8224509 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 0.915 | 1.124 | 0.387 | 1.03 | 1.008 | 0.669 | 0.281 | 1.498 | 1.442 | 0.936 | 0.991 | 1.873 | 0.864 | 1.147 | 0.963 | 0.553 | 1.532 | 0.0 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17107
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
PVRKRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.528
|
0.254
|
0.092
|
0.555
|
0.115
|
0.158
|
0.047
|
0.163
|
0.071
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013152
|
1.000
|
1.000
|
Hsc_gene_13846.t1
|
Hsc_gene_13846.t1
|
— |
P91455.1 Adenine phosphoribosyltransferase [Caenorhabditis elegans]
|
KJH53366.1 putative adenine phosphoribosyltransferase [Dictyocaulus viviparus]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003999|GO:0005737|GO:0006168
|
GO:0005575_0.763|GO:0110165_0.747|GO:0003674_0.683|GO:0008150_0.617|GO:0005622_0.606|GO:0005737_0.603|GO:0009987_0.551|GO:0003824_0.524
|
IPR000836+39-153_39-176+|IPR005764+10-177_11-177+|IPR029057+1-178_13-165+|IPR050054+7-177+
|
— |
PF00156+39-153+Phosphoribosyl_transferase_domain
|
G3DSA:3.40.50.2020:FF:000021+3-177+Adenine_phosphoribosyltransferase
|
PTHR32315+7-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-178
|
4x45_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
19813.960
|
5.951
|
-0.500
|
24.719
|
9.551
|
42.697
|
57.303
|
12.360
|
12.360
|
49.438
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
midnightblue
|
706.817
|
292.813
|
461.158
|
1107.906
|
1295.946
|
805.785
|
759.625
|
357.343
|
151.502
|
1073.482
|
678.348
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.425
|
1.783
|
1.374
|
0.194
|
-0.671
|
— |
-1.277
|
1.230
|
-2.936
|
— | — | — | — |
No JSON data available for plots.