Hg_chrom9_TN10mRNA_18097
Organism: Heterodera glycines Gene Locus: chr9:8225082-8231796 Feature type: polypeptideProtein Sequence
Length: 914
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.196 | 1.018 | 1.213 | 0.302 | 1.021 | 1.767 | 0.977 | 2.024 | 0.778 | 0.872 | 0.514 | 1.995 | 0.881 | 1.178 | 1.139 | 1.188 | 0.807 | 0.796 | 0.421 | 0.547 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.497
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRS,RVTKRKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.773
|
0.142
|
0.005
|
0.537
|
0.098
|
0.232
|
0.138
|
0.021
|
0.063
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013153
|
1.000
|
1.000
|
Hsc_gene_13847.t1
|
Hsc_gene_13847.t1
|
— |
Q1LUS8.1 Ran-binding protein 10 [Danio rerio]
|
KAI1701983.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.766|GO:0008150_0.705|GO:0005622_0.700|GO:0009987_0.550|GO:0005737_0.549|GO:0016020_0.537
|
IPR001870+91-282+|IPR003877+157-281_160-280+|IPR006595+433-490+|IPR013144+787-892+|IPR013320+120-286+|IPR024964+434-522_819-876+|IPR035782+135-279+|IPR043136+67-296+|IPR050618+363-873+
|
SM00449+157-281+|SM00668+433-490+|SM00757+787-892+
|
PF00622+160-280+SPRY_domain|PF10607+434-522_819-876+CTLH/CRA_C-terminal_to_LisH_motif_domain
|
— |
PTHR12864+363-873+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-145;333-739;905-914
|
2.000
|
146-332;740-904
|
7nsc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
99406.090
|
5.650
|
-16.500
|
25.821
|
9.628
|
50.328
|
49.672
|
13.020
|
12.801
|
55.033
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
2442.226
|
1774.525
|
1759.170
|
1964.794
|
1804.672
|
2037.753
|
1846.388
|
1924.210
|
1175.391
|
4886.376
|
3295.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.241
|
— |
0.268
|
-0.155
|
0.190
|
-0.132
|
— | — | — | — | — | — | — |
No JSON data available for plots.