Hg_chrom9_TN10mRNA_18098
Organism: Heterodera glycines Gene Locus: chr9:8234187-8240505 Feature type: polypeptideProtein Sequence
Length: 1,303
(Signal peptide: 1-41)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.482 | 2.267 | 1.981 | 0.397 | 2.686 | 2.834 | 1.115 | 1.458 | 0.409 | 0.363 | 1.07 | 0.632 | 0.32 | 0.841 | 0.955 | 0.614 | 0.755 | 0.326 | 0.236 | 0.113 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
nucleus
|
RKKR,EEKKREKRETNSMLEREKERSEREKKRAEEEKEKTEKE
|
— | — | — | — |
1-41
|
0.928
|
0.983
|
0.000
|
0.000
|
0.447
|
0.155
|
0.022
|
0.546
|
0.071
|
0.026
|
0.033
|
0.030
|
0.203
|
0.656
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002585
|
2.000
|
2.000
|
Hsc_gene_13848.t1;Hsc_gene_13848.t2
|
— | — | — |
XP_002648544.1 Protein CBG24855, partial [Caenorhabditis briggsae];CAP21369.1 Protein CBG24855, partial [Caenorhabditis briggsae]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000884+1185-1243+|IPR036383+1188-1242_1189-1239+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
46-1188
|
2.000
|
1-45;1189-1303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
146828.870
|
4.095
|
-180.000
|
41.673
|
4.758
|
71.374
|
28.626
|
14.658
|
27.015
|
50.729
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
12741.417
|
969.186
|
2837.128
|
838.194
|
294.737
|
109.702
|
52.936
|
778.434
|
67215.960
|
3126.609
|
30593.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.319
|
-0.347
|
-1.650
|
-1.539
|
-1.412
|
-1.042
|
2.725
|
-3.738
|
4.308
|
-6.167
|
-3.247
|
— | — |