Hg_chrom9_TN10mRNA_18100
Organism: Heterodera glycines Gene Locus: chr9:8241187-8244844 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.268 | 0.846 | 0.803 | 1.433 | 0.476 | 1.465 | 0.278 | 1.299 | 1.097 | 1.193 | 0.275 | 1.375 | 0.938 | 0.849 | 1.59 | 1.967 | 1.022 | 1.141 | 0.799 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17110
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— |
RRRR,RKSSAVPRCELCGYRYRRN
|
— | — |
48-68
|
1.000
|
— | — |
0.000
|
— | — |
0.259
|
0.165
|
0.040
|
0.175
|
0.703
|
0.644
|
0.583
|
0.002
|
0.207
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013154
|
1.000
|
1.000
|
Hsc_gene_13849.t1
|
Hsc_gene_13849.t1
|
— |
Q0VD59.1 E3 ubiquitin-protein ligase MARCHF8 [Bos taurus]
|
KAF7639460.1 RING-CH-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0005575_0.880|GO:0110165_0.880|GO:0008150_0.819|GO:0016020_0.814|GO:0071944_0.792|GO:0005886_0.773|GO:0005622_0.729|GO:0003674_0.698|GO:0043226_0.698|GO:0043229_0.672|GO:0043227_0.654|GO:0043231_0.639|GO:0008152_0.605|GO:0043170_0.605|GO:0044238_0.597|GO:0005737_0.583|GO:0009987_0.548|GO:0019538_0.518|GO:0005773_0.512
|
IPR011016+61-128_68-122_69-121+|IPR013083+53-132+
|
SM00744+68-122+
|
PF12906+69-121+RING-variant_domain
|
— |
PTHR46347+46-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;333-385
|
1.000
|
9-332
|
2d8s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
42134.080
|
8.503
|
14.000
|
19.481
|
8.312
|
48.831
|
51.169
|
12.208
|
7.273
|
57.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
500.509
|
1600.370
|
1073.965
|
381.744
|
153.516
|
153.611
|
215.242
|
1203.125
|
199.720
|
246.846
|
226.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.805
|
-2.205
|
-1.383
|
-1.347
|
— |
0.496
|
2.864
|
-2.340
|
— | — | — | — | — |
No JSON data available for plots.