Hg_chrom9_TN10mRNA_18101
Organism: Heterodera glycines Gene Locus: chr9:8250332-8254406 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 1.387 | 0.834 | 0.712 | 0.688 | 1.176 | 0.519 | 2.179 | 1.325 | 1.581 | 0.904 | 1.619 | 1.593 | 0.706 | 1.264 | 0.655 | 0.489 | 1.112 | 2.47 | 1.012 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.025
|
0.182
|
0.016
|
0.101
|
0.380
|
0.247
|
0.122
|
0.004
|
0.583
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013155
|
1.000
|
1.000
|
Hsc_gene_13850.t1
|
Hsc_gene_13850.t1
|
— |
Q03412.1 Innexin unc-7 [Caenorhabditis elegans]
|
KHN79144.1 Innexin unc-9 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.872|GO:0008150_0.839|GO:0009987_0.724|GO:0030054_0.611|GO:0003674_0.558|GO:0051179_0.540|GO:0016020_0.537|GO:0006810_0.531|GO:0051234_0.531|GO:0065007_0.521|GO:0071944_0.520|GO:0005911_0.519|GO:0070161_0.519|GO:0005886_0.512|GO:0005921_0.502
|
IPR000990+14-429_17-397_22-391_45-56_73-82_102-124_209-223_285-301+
|
— |
PF00876+22-391+Innexin
|
— |
PTHR11893+14-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
407-436
|
1.000
|
1-406
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
51134.560
|
9.644
|
24.500
|
25.229
|
16.743
|
43.349
|
56.651
|
16.514
|
8.716
|
41.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
397.524
|
266.967
|
42.297
|
67.144
|
283.328
|
568.969
|
488.562
|
2027.206
|
0.000
|
334.991
|
191.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.888
|
-2.129
|
0.775
|
2.047
|
1.020
|
— |
1.735
|
-1.914
|
-9.202
|
6.926
|
— | — | — |
No JSON data available for plots.