Hg_chrom9_TN10mRNA_18102
Organism: Heterodera glycines Gene Locus: chr9:8254213-8263596 Feature type: polypeptideProtein Sequence
Length: 1,424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.29 | 0.996 | 0.779 | 0.775 | 0.925 | 2.107 | 0.543 | 1.545 | 0.687 | 1.215 | 0.734 | 1.652 | 0.702 | 1.215 | 1.404 | 1.204 | 1.14 | 0.755 | 0.486 | 0.062 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17112
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.203
|
0.022
|
0.789
|
0.108
|
0.094
|
0.119
|
0.039
|
0.263
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013156
|
1.000
|
1.000
|
Hsc_gene_13851.t1
|
Hsc_gene_13851.t1
|
— |
Q3ULZ2.3 FH2 domain-containing protein 1 [Mus musculus]
|
KAF7639467.1 FH2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.838|GO:0110165_0.838|GO:0009987_0.830|GO:0016043_0.720|GO:0071840_0.720|GO:0005622_0.712|GO:0006996_0.633|GO:0016020_0.612|GO:0003674_0.592|GO:0065007_0.589|GO:0005488_0.586|GO:0007010_0.567|GO:0043226_0.563|GO:0005515_0.555|GO:0050789_0.546|GO:0043229_0.536|GO:0050794_0.535|GO:0071944_0.529|GO:0032502_0.504|GO:0005886_0.503
|
IPR015425+427-871_427-927_430-845+|IPR027649+299-1400+|IPR042201+422-856+
|
SM00498+427-927+
|
PF02181+430-845+Formin_Homology_2_Domain
|
— |
PTHR46345+299-1400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-453;905-1424
|
2.000
|
1-168;454-904
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
156026.660
|
9.032
|
49.000
|
24.649
|
6.461
|
52.528
|
47.472
|
14.817
|
9.831
|
53.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
920.203
|
502.599
|
317.919
|
692.055
|
760.268
|
1026.674
|
1252.278
|
2176.093
|
370.902
|
1224.753
|
858.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.890
|
0.325
|
1.231
|
— |
0.447
|
0.298
|
0.984
|
-0.656
|
— | — | — | — | — |
No JSON data available for plots.