SCN Proteipedia

Hg_chrom9_TN10mRNA_18103

Organism: Heterodera glycines Gene Locus: chr9:8267818-8274200 Feature type: polypeptide

Protein Sequence

Length: 522

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.98	1.203	0.697	0.396	0.479	2.8	1.209	1.533	0.724	1.036	0.435	1.916	0.639	1.179	1.134	1.232	1.036	0.958	0.147	0.563	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17113	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RGRGVKRHNARRRGG	—	—	—	—	—	—	0.000	—	—	0.933	0.134	0.040	0.302	0.012	0.072	0.022	0.006	0.031	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013157	1.000	1.000	Hsc_gene_13852.t2	Hsc_gene_13852.t1;Hsc_gene_13852.t2	—	Q61313.2 Transcription factor AP-2-beta [Mus musculus]	KHN80354.1 Transcription factor AP-2-beta [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0005634\|GO:0006355	GO:0008150_0.879\|GO:0009987_0.836\|GO:0065007_0.787\|GO:0050789_0.776\|GO:0050794_0.768\|GO:0005575_0.738\|GO:0110165_0.732\|GO:0003674_0.698\|GO:0008152_0.698\|GO:0019222_0.698\|GO:0031323_0.698\|GO:0044237_0.698\|GO:0044238_0.695\|GO:0048518_0.695\|GO:0080090_0.695\|GO:0043170_0.691\|GO:0005488_0.687\|GO:0060255_0.684\|GO:0048522_0.682\|GO:0005622_0.679\|GO:0009058_0.679\|GO:0009059_0.679\|GO:0010467_0.679\|GO:0044249_0.679\|GO:0009889_0.671\|GO:0010556_0.671\|GO:0031326_0.671\|GO:0010468_0.663\|GO:0006139_0.661\|GO:0009893_0.661\|GO:0016070_0.657\|GO:0019219_0.657\|GO:0051252_0.657\|GO:0090304_0.657\|GO:0032502_0.655\|GO:0034654_0.651\|GO:0032501_0.650\|GO:0032774_0.650\|GO:0141187_0.650\|GO:0006351_0.644\|GO:0006355_0.644\|GO:0043226_0.644\|GO:2001141_0.644\|GO:0010604_0.643\|GO:0031325_0.643\|GO:0009891_0.640\|GO:0031328_0.637\|GO:0010557_0.628\|GO:0045935_0.624\|GO:0051254_0.624\|GO:0043229_0.622\|GO:0097159_0.614\|GO:0006366_0.613\|GO:0006357_0.609\|GO:0003676_0.607\|GO:0045893_0.606\|GO:1902680_0.606\|GO:0048856_0.603\|GO:0045944_0.585\|GO:0007275_0.574\|GO:0016020_0.569\|GO:0048731_0.562\|GO:0003677_0.552\|GO:0003690_0.552\|GO:0043565_0.552\|GO:1990837_0.552\|GO:0043227_0.501	IPR004979+189-515+\|IPR013854+305-500_343-357_358-373_374-388+	—	PF03299+305-500+Transcription_factor_AP-2	—	PTHR10812+189-515+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-307;504-522	1.000	308-503	8j0q_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.943	55955.680	9.472	17.000	18.199	7.471	49.234	50.766	11.494	6.705	56.130

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	darkred	505.250	282.278	10.179	9.966	405.716	1742.281	102.358	449.325	17.968	1071.204	619.817

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-5.020	-4.958	—	5.312	2.118	-4.080	-2.074	-1.987	-6.011	—	—	—	—

No JSON data available for plots.

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