SCN Proteipedia

Hg_chrom9_TN10mRNA_18105

Organism: Heterodera glycines Gene Locus: chr9:8285845-8288243 Feature type: polypeptide

Protein Sequence

Length: 301

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.811	1.313	1.752	0.229	1.827	1.533	0.514	0.831	1.034	1.212	1.309	1.173	0.923	0.639	0.949	0.949	0.871	0.705	0.511	0.391	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17115	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.843

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|golgi_apparatus	—	—	—	—	—	—	—	—	0.000	—	—	0.165	0.270	0.065	0.706	0.234	0.374	0.717	0.073	0.104	0.067

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013158	1.000	1.000	Hsc_gene_13855.t1	—	—	Q9D5V6.1 Synapse-associated protein 1 [Mus musculus]	KAF7639464.1 BSD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.945\|GO:0005575_0.908\|GO:0110165_0.905\|GO:0009987_0.895\|GO:0065007_0.856\|GO:0050789_0.846\|GO:0050794_0.825\|GO:0005622_0.734\|GO:0007154_0.725\|GO:0023052_0.724\|GO:0043226_0.665\|GO:0016020_0.660\|GO:0003674_0.657\|GO:0005737_0.641\|GO:0043229_0.641\|GO:0043227_0.619\|GO:0050896_0.612\|GO:0043231_0.600\|GO:0008152_0.599\|GO:0043170_0.586\|GO:0044238_0.585\|GO:0051716_0.581\|GO:0044237_0.576\|GO:0019222_0.563\|GO:0048518_0.562\|GO:0032502_0.556\|GO:0048522_0.556\|GO:0031323_0.553\|GO:0060255_0.550\|GO:0080090_0.544\|GO:0071944_0.543\|GO:0019538_0.542\|GO:0005886_0.532\|GO:0005634_0.530\|GO:0009893_0.530\|GO:0042221_0.526\|GO:0048869_0.526\|GO:0030154_0.525\|GO:0031325_0.523\|GO:0010604_0.519\|GO:0007165_0.518\|GO:0003824_0.515\|GO:1901700_0.509\|GO:0043412_0.506\|GO:0051246_0.503\|GO:0070887_0.503\|GO:0036211_0.502\|GO:0050793_0.502	IPR005607+137-195_139-195_154-193+\|IPR035925+109-206_121-195+	SM00751+137-195+	PF03909+154-193+BSD_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63;200-301	1.000	64-199	1x3a_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.847	34149.830	4.437	-19.500	35.548	6.977	59.136	40.864	14.950	20.598	47.176

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1042.719	1259.312	685.826	521.839	645.859	1153.072	1391.169	1260.668	2242.885	285.576	1124.423

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.106	-1.408	-0.286	0.276	0.851	0.282	—	0.287	2.863	—	—	—	—

No JSON data available for plots.

Back to Browser