Hg_chrom9_TN10mRNA_18106
Organism: Heterodera glycines Gene Locus: chr9:8289237-8291909 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.157 | 1.331 | 1.085 | 0.429 | 1.368 | 0.574 | 0.829 | 1.368 | 0.553 | 1.782 | 1.131 | 0.878 | 1.106 | 0.478 | 1.523 | 0.64 | 0.693 | 0.603 | 0.957 | 1.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide|peroxisomal_targeting_signal
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.169
|
0.814
|
0.240
|
0.263
|
0.099
|
0.049
|
0.039
|
0.727
|
0.072
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013159
|
1.000
|
1.000
|
Hsc_gene_13861.t1
|
Hsc_gene_13861.t1
|
— |
Q5R8E4.1 Regulator of microtubule dynamics protein 1 [Pongo abelii]
|
KAI6182019.1 Regulator of microtubule dynamics protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.875|GO:0110165_0.873|GO:0005622_0.778|GO:0043226_0.733|GO:0043229_0.700|GO:0016020_0.618|GO:0005737_0.581|GO:0043227_0.548|GO:0043231_0.537|GO:0003674_0.504
|
IPR011990+159-372_224-365+|IPR019375+2-100_2-105+|IPR049039+196-380+
|
— |
PF10246+2-100+Mitochondrial_ribosomal_protein_MRP-S35|PF21033+196-380+Regulator_of_microtubule_dynamics_protein_1-3
|
— |
PTHR13447+2-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-402
|
7pnw_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
45796.960
|
8.300
|
8.500
|
31.841
|
12.438
|
48.507
|
51.493
|
17.662
|
14.179
|
45.025
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2012.349
|
1708.108
|
1310.332
|
1362.513
|
1720.227
|
1722.036
|
1599.860
|
1503.613
|
1497.423
|
3583.452
|
2689.440
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-0.463
|
0.165
|
0.304
|
— | — |
-0.300
|
0.233
|
— | — | — | — | — |
No JSON data available for plots.