Hg_chrom9_TN10mRNA_18108
Organism: Heterodera glycines Gene Locus: chr9:8294570-8295531 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 1.839 | 1.027 | 1.169 | 1.13 | 1.014 | 0.74 | 1.13 | 1.255 | 0.763 | 0.856 | 0.997 | 1.883 | 0.652 | 1.038 | 0.404 | 1.111 | 1.198 | 0.435 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17118
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PEEKRKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.696
|
0.298
|
0.037
|
0.794
|
0.114
|
0.051
|
0.119
|
0.164
|
0.058
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005019
|
2.000
|
1.000
|
Hsc_gene_13859.t1
|
Hsc_gene_13859.t1
|
— |
Q5RIV4.2 tRNA-specific adenosine deaminase 2 [Danio rerio]
|
KAI1727909.1 cytidine and deoxycytidylate deaminase zinc-binding region domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0008270|GO:0016787
|
GO:0008150_0.772|GO:0005575_0.766|GO:0110165_0.707|GO:0008152_0.652|GO:0003674_0.644|GO:0009987_0.642|GO:0005622_0.629|GO:0016020_0.599|GO:0044237_0.569|GO:0043226_0.565|GO:0003824_0.563|GO:0043229_0.560|GO:0009058_0.556|GO:0044238_0.547|GO:0044249_0.538|GO:0043227_0.535|GO:0005737_0.534|GO:0043231_0.533
|
IPR002125+4-119_6-109+|IPR016192+55-98+|IPR016193+4-158+
|
— |
PF00383+6-109+Cytidine_and_deoxycytidylate_deaminase_zinc-binding_region
|
— |
PTHR11079+5-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-177
|
1.000
|
1-166
|
9hmm_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
19968.600
|
6.093
|
-1.000
|
25.424
|
12.994
|
46.893
|
53.107
|
12.994
|
12.429
|
52.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
299.330
|
239.901
|
224.866
|
205.651
|
199.514
|
151.452
|
214.152
|
192.590
|
150.150
|
661.411
|
442.299
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.324
|
-0.359
|
— | — |
-0.384
|
0.508
|
— |
0.294
|
— | — | — | — | — |
No JSON data available for plots.