Hg_chrom9_TN10mRNA_18109
Organism: Heterodera glycines Gene Locus: chr9:8295687-8297760 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 1.325 | 1.083 | 0.357 | 1.339 | 1.196 | 0.864 | 1.813 | 0.461 | 1.4 | 1.335 | 2.591 | 1.439 | 0.847 | 1.005 | 0.592 | 0.892 | 0.667 | 0.598 | 0.533 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17119
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRQQKMSEEKQIGRKKPR,KRQQKMSEEKQIGRKKPRS,RKQFATLLEKHMEVRRHEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.879
|
0.077
|
0.027
|
0.333
|
0.027
|
0.035
|
0.072
|
0.005
|
0.032
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000447
|
5.000
|
3.000
|
Hsc_gene_13858.t1;Hsc_gene_13867.t1;Hsc_gene_17309.t1
|
— | — |
Q9NWY4.2 Histone PARylation factor 1 [Homo sapiens]
|
KHN83173.1 UPF0609 protein C4orf27 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006974|GO:0010835|GO:0042393
|
GO:0008150_0.948|GO:0005575_0.900|GO:0110165_0.900|GO:0009987_0.888|GO:0003674_0.872|GO:0005622_0.843|GO:0005488_0.812|GO:0050896_0.793|GO:0043226_0.788|GO:0043229_0.771|GO:0051716_0.757|GO:0006950_0.724|GO:0033554_0.697|GO:0006974_0.678|GO:0043228_0.623|GO:0043232_0.620|GO:0005694_0.555|GO:0016020_0.551|GO:0090734_0.540|GO:0065007_0.523
|
IPR019361+8-159_80-371+
|
— |
PF10228+80-371+Histone_PARylation_factor_1
|
— |
PTHR13386+8-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;197-243
|
2.000
|
41-196;244-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
43817.890
|
7.362
|
6.000
|
31.347
|
11.399
|
51.295
|
48.705
|
17.358
|
13.990
|
45.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
503.007
|
373.442
|
336.931
|
366.591
|
497.046
|
321.250
|
736.123
|
249.394
|
318.613
|
881.406
|
640.209
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.379
|
-0.164
|
0.231
|
0.408
|
-0.615
|
1.206
|
-0.472
|
1.705
|
— | — | — | — | — |
No JSON data available for plots.