Hg_chrom9_TN10mRNA_18111
Organism: Heterodera glycines Gene Locus: chr9:8298755-8300240 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 1.287 | 0.791 | 0.681 | 2.372 | 1.419 | 0.471 | 0.395 | 1.405 | 0.588 | 1.497 | 2.093 | 1.427 | 0.608 | 1.936 | 0.339 | 0.778 | 0.479 | 0.0 | 1.163 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17121
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKNRQAAILSGIILKKKK.
|
— | — | — | — | — | — |
0.000
|
— | — |
0.931
|
0.168
|
0.063
|
0.246
|
0.038
|
0.017
|
0.053
|
0.016
|
0.056
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013161
|
1.000
|
1.000
|
Hsc_gene_13856.t1
|
Hsc_gene_13856.t1
|
— |
Q9D6J3.1 Splicing factor YJU2 [Mus musculus]
|
KAI1727918.1 coiled-coil domain-containing protein 94 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398
|
GO:0005575_0.874|GO:0110165_0.873|GO:0005622_0.849|GO:0008150_0.723|GO:0043226_0.641|GO:0043229_0.632|GO:0009987_0.623|GO:0016020_0.616|GO:0043227_0.565|GO:0032991_0.539|GO:0043231_0.528
|
IPR007590+5-238_11-234+|IPR043701+3-251+
|
— |
PF04502+11-234+Saf4/Yju2_protein
|
— |
PTHR12111+5-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
181-253
|
1.000
|
1-180
|
8i0w_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
30074.090
|
7.995
|
3.000
|
38.735
|
9.881
|
56.917
|
43.083
|
20.158
|
18.577
|
36.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1011.116
|
529.223
|
770.727
|
1035.892
|
1254.760
|
1132.532
|
1023.102
|
1068.695
|
1519.438
|
728.455
|
1067.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.312
|
0.832
|
0.536
|
0.244
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.