Hg_chrom9_TN10mRNA_18112
Organism: Heterodera glycines Gene Locus: chr9:8301389-8302607 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.047 | 1.047 | 0.818 | 0.517 | 1.0 | 1.026 | 0.714 | 0.75 | 0.444 | 1.622 | 1.439 | 2.353 | 1.944 | 0.385 | 1.224 | 1.0 | 0.492 | 1.061 | 0.0 | 1.029 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17122
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRLYVKAVFTGYKRGHR
|
13-43
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.246
|
0.127
|
0.081
|
0.231
|
0.767
|
0.232
|
0.464
|
0.091
|
0.248
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005020
|
2.000
|
1.000
|
Hsc_gene_13857.t1
|
Hsc_gene_13857.t1
|
— |
P49180.3 Large ribosomal subunit protein eL33 [Caenorhabditis elegans]
|
KAI1727303.1 ribosomal protein l35Ae domain-containing protein [Ditylenchus destructor];KAI1727361.1 ribosomal protein l35Ae domain-containing protein [Ditylenchus destructor]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.866|GO:0110165_0.866|GO:0005622_0.745|GO:0005737_0.719|GO:0043226_0.713|GO:0043229_0.703|GO:0003674_0.663|GO:0016020_0.582|GO:0043227_0.519
|
IPR001780+21-76_25-76+|IPR009000+25-77+|IPR038661+13-87+
|
— |
PF01247+25-76+Ribosomal_protein_L35Ae
|
— |
PTHR10902+21-76+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-200
|
9cai_Cf
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
22672.370
|
10.037
|
11.500
|
27.500
|
12.000
|
46.000
|
54.000
|
17.000
|
10.500
|
44.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
350.023
|
136.379
|
186.105
|
352.760
|
475.467
|
356.870
|
532.198
|
223.937
|
381.176
|
396.577
|
389.976
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.234
|
1.032
|
0.398
|
-0.399
|
0.587
|
-0.780
|
1.392
|
— | — | — | — | — |
No JSON data available for plots.