Hg_chrom9_TN10mRNA_18119
Organism: Heterodera glycines Gene Locus: chr9:8322913-8323345 Feature type: polypeptideProtein Sequence
Length: 123
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 1.134 | 1.035 | 0.841 | 0.949 | 1.876 | 0.968 | 1.626 | 1.265 | 1.428 | 0.739 | 1.913 | 1.581 | 0.313 | 0.83 | 1.161 | 0.267 | 0.862 | 0.0 | 0.956 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17129
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.660
|
0.305
|
0.019
|
0.501
|
0.159
|
0.331
|
0.136
|
0.040
|
0.124
|
0.257
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — | — |
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.922|GO:0003674_0.818|GO:0005575_0.737|GO:0110165_0.728|GO:0065007_0.725|GO:0050789_0.717|GO:0003824_0.687|GO:0008152_0.673|GO:0016787_0.672|GO:0140096_0.662|GO:0008233_0.658|GO:0009987_0.657|GO:0044238_0.652|GO:0019783_0.650|GO:0101005_0.650|GO:0043170_0.643|GO:0019538_0.616|GO:0005622_0.588|GO:0004843_0.553|GO:0008234_0.553|GO:0005737_0.545|GO:0050794_0.510
|
IPR001394+13-64+|IPR038765+14-71+
|
— |
PF00443+13-64+Ubiquitin_carboxyl-terminal_hydrolase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-123
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
13686.570
|
6.067
|
-1.000
|
23.577
|
12.195
|
45.528
|
54.472
|
12.195
|
11.382
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
16.502
|
5.433
|
13.679
|
22.152
|
41.944
|
31.444
|
48.214
|
15.004
|
3.598
|
2.798
|
3.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.097
|
1.892
|
0.809
|
0.890
|
— |
0.629
|
-1.172
|
1.828
|
— | — | — | — | — |
No JSON data available for plots.