Hg_chrom9_TN10mRNA_18121
Organism: Heterodera glycines Gene Locus: chr9:8327660-8331564 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 0.942 | 1.202 | 0.809 | 1.031 | 0.875 | 0.508 | 1.493 | 1.516 | 1.844 | 0.743 | 1.254 | 1.244 | 0.574 | 1.305 | 1.097 | 0.699 | 0.743 | 0.492 | 0.815 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17131
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.237
|
0.167
|
0.464
|
0.262
|
0.649
|
0.186
|
0.271
|
0.543
|
0.410
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q865S1.2 AP-3 complex subunit delta-1 [Bos taurus]
|
KAF7639491.1 AP-3 complex subunit delta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.914|GO:0110165_0.910|GO:0016020_0.849|GO:0005622_0.827|GO:0008150_0.756|GO:0005737_0.719|GO:0009987_0.712|GO:0043226_0.704|GO:0043229_0.689|GO:0071944_0.674|GO:0005886_0.673|GO:0043227_0.660|GO:0043231_0.640|GO:0051179_0.553|GO:0006810_0.542|GO:0051234_0.542
|
IPR002553+42-164+|IPR011989+24-184+|IPR016024+29-159+|IPR017105+157-244+
|
— |
PF01602+42-164+Adaptin_N_terminal_region
|
— |
PTHR22781+157-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-469
|
9c5b_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
52962.960
|
6.499
|
0.000
|
27.079
|
10.874
|
46.482
|
53.518
|
14.286
|
12.793
|
45.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
violet
|
250.185
|
238.106
|
168.566
|
217.658
|
253.155
|
227.204
|
189.577
|
113.476
|
137.410
|
463.600
|
323.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.727
|
-0.267
|
0.477
|
— | — |
-0.252
|
-1.110
|
0.883
|
— | — | — | — | — |
No JSON data available for plots.