SCN Proteipedia

Hg_chrom9_TN10mRNA_18122

Organism: Heterodera glycines Gene Locus: chr9:8331992-8334766 Feature type: polypeptide

Protein Sequence

Length: 523

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.756	1.512	1.147	0.527	1.02	1.079	0.501	1.434	0.595	1.292	1.449	2.249	1.806	0.956	0.78	0.765	1.254	0.637	1.177	0.619	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17132	—	—	1.222	1.000	1.000	1.000	2.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.704

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	endoplasmic_reticulum	—	RKKR	—	—	—	—	—	—	0.000	—	—	0.282	0.134	0.011	0.280	0.581	0.320	0.358	0.004	0.235	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000447	5.000	3.000	Hsc_gene_13858.t1;Hsc_gene_13867.t1;Hsc_gene_17309.t1	—	—	—	XP_001891653.1 2700029M09Rik protein, putative [Brugia malayi];CRZ22662.1 Bm4708 [Brugia malayi];VIO86008.1 2700029M09Rik protein, putative [Brugia malayi]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006974\|GO:0010835\|GO:0042393	GO:0008150_0.961\|GO:0005575_0.937\|GO:0110165_0.937\|GO:0009987_0.928\|GO:0016020_0.904\|GO:0065007_0.884\|GO:0003674_0.854\|GO:0005622_0.842\|GO:0043226_0.823\|GO:0050896_0.816\|GO:0051716_0.803\|GO:0043229_0.801\|GO:0043227_0.780\|GO:0016043_0.773\|GO:0071840_0.773\|GO:0005488_0.772\|GO:0043231_0.756\|GO:0005515_0.751\|GO:0008152_0.749\|GO:0044238_0.746\|GO:0043170_0.743\|GO:0006950_0.724\|GO:0006139_0.700\|GO:0033554_0.695\|GO:0065009_0.691\|GO:0090304_0.691\|GO:0003824_0.688\|GO:0050790_0.687\|GO:0006259_0.677\|GO:0006325_0.676\|GO:0006338_0.676\|GO:0016740_0.676\|GO:0006974_0.675\|GO:0140096_0.673\|GO:0006281_0.670\|GO:0006302_0.670\|GO:0010835_0.670\|GO:0016757_0.670\|GO:0016763_0.670\|GO:0051338_0.670\|GO:0140861_0.670\|GO:1990404_0.670\|GO:0060090_0.657\|GO:0030674_0.655\|GO:0003682_0.650\|GO:0042393_0.650\|GO:0140767_0.650\|GO:0140768_0.650\|GO:0005634_0.592\|GO:0043228_0.589\|GO:0043232_0.589\|GO:0005694_0.547\|GO:0000785_0.540\|GO:0090734_0.540	IPR019361+43-373_137-367+	—	PF10228+137-367+Histone_PARylation_factor_1	—	PTHR13386+43-373+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-64;507-523	1.000	65-506	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.716	60075.590	8.456	12.500	28.681	13.002	52.390	47.610	16.252	12.428	47.228

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	622.500	480.578	414.075	423.578	443.520	546.513	326.341	496.418	1141.337	693.299	885.315

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.443	-0.319	—	—	0.317	-0.736	—	-0.466	—	—	—	—	—

No JSON data available for plots.

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