Hg_chrom9_TN10mRNA_18123
Organism: Heterodera glycines Gene Locus: chr9:8335489-8337769 Feature type: polypeptideProtein Sequence
Length: 461
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.513 | 1.42 | 1.047 | 1.265 | 1.057 | 0.516 | 0.651 | 1.35 | 1.29 | 0.92 | 1.914 | 1.627 | 0.584 | 0.974 | 1.023 | 0.711 | 0.723 | 0.667 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17133
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.203
|
0.073
|
0.049
|
0.262
|
0.507
|
0.266
|
0.277
|
0.052
|
0.548
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — |
O60139.2 Probable ubiquitin carboxyl-terminal hydrolase 4 [Schizosaccharomyces pombe 972h-]
|
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.850|GO:0005575_0.800|GO:0110165_0.800|GO:0003674_0.789|GO:0005622_0.686|GO:0003824_0.658|GO:0016020_0.656|GO:0016787_0.636|GO:0008152_0.628|GO:0140096_0.622|GO:0044238_0.610|GO:0008233_0.609|GO:0043170_0.602|GO:0019783_0.594|GO:0101005_0.594|GO:0009987_0.589|GO:0043226_0.588|GO:0019538_0.587|GO:0065007_0.587|GO:0043229_0.570|GO:0005737_0.562|GO:0050789_0.559|GO:0043227_0.517|GO:0043231_0.509
|
IPR001394+25-189+|IPR038765+12-170+|IPR050185+24-306+
|
— |
PF00443+25-189+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+24-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
52013.040
|
4.578
|
-18.000
|
27.549
|
9.544
|
49.675
|
50.325
|
12.148
|
15.401
|
49.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
56.714
|
10.679
|
23.101
|
50.825
|
67.214
|
103.529
|
93.578
|
92.649
|
0.000
|
82.532
|
47.161
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
2.112
|
1.245
|
— |
0.640
|
— | — | — |
-7.186
|
6.524
|
— | — | — |
No JSON data available for plots.