Hg_chrom9_TN10mRNA_18124
Organism: Heterodera glycines Gene Locus: chr9:8338659-8341283 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.938 | 1.5 | 0.978 | 1.298 | 0.717 | 1.654 | 0.64 | 1.613 | 1.792 | 0.944 | 0.733 | 1.265 | 1.195 | 0.31 | 2.085 | 0.384 | 0.705 | 1.303 | 0.414 | 0.791 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.631
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.152
|
0.051
|
0.290
|
0.192
|
0.557
|
0.533
|
0.036
|
0.287
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013163
|
2.000
|
0.000
|
0.000
|
Hsc_gene_13864.t1;Hsc_gene_13866.t1;Hsc_gene_13869.t1
|
— |
O14617.1 AP-3 complex subunit delta-1 [Homo sapiens]
|
KAF7639491.1 AP-3 complex subunit delta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.872|GO:0110165_0.862|GO:0005622_0.780|GO:0008150_0.735|GO:0016020_0.733|GO:0005737_0.684|GO:0009987_0.672|GO:0043226_0.650|GO:0043229_0.627|GO:0043227_0.606|GO:0043231_0.594|GO:0071944_0.541|GO:0005886_0.525
|
IPR002553+41-116+|IPR011989+11-119+|IPR016024+25-118+|IPR017105+17-116+
|
— |
PF01602+41-116+Adaptin_N_terminal_region
|
— |
PTHR22781+17-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
9c5b_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
21405.730
|
9.764
|
13.000
|
27.957
|
10.753
|
47.849
|
52.151
|
18.280
|
9.677
|
46.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
139.550
|
262.982
|
156.442
|
112.414
|
117.678
|
79.046
|
122.336
|
180.262
|
108.931
|
142.149
|
127.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.979
|
-1.363
|
-0.368
|
— |
-0.559
|
0.640
|
1.083
|
-0.417
|
— | — | — | — | — |
No JSON data available for plots.