SCN Proteipedia

Hg_chrom9_TN10mRNA_18125

Organism: Heterodera glycines Gene Locus: chr9:8341301-8344988 Feature type: polypeptide

Protein Sequence

Length: 447

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.884	1.249	1.18	0.54	1.119	1.205	0.586	1.23	0.795	1.421	1.051	1.974	1.554	0.99	1.141	0.703	1.284	0.61	1.033	0.395	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_17135	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.928

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	KKRQQKLSEEKQIGRKKPM	—	—	—	—	—	—	0.000	—	—	0.366	0.079	0.021	0.294	0.515	0.331	0.394	0.005	0.309	0.111

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000447	5.000	3.000	Hsc_gene_13858.t1;Hsc_gene_13867.t1;Hsc_gene_17309.t1	—	—	—	XP_001891653.1 2700029M09Rik protein, putative [Brugia malayi];CRZ22662.1 Bm4708 [Brugia malayi];VIO86008.1 2700029M09Rik protein, putative [Brugia malayi]	No	-0.180

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006974\|GO:0010835\|GO:0042393	GO:0008150_0.958\|GO:0005575_0.937\|GO:0110165_0.936\|GO:0009987_0.914\|GO:0016020_0.892\|GO:0065007_0.867\|GO:0003674_0.846\|GO:0050896_0.807\|GO:0005622_0.800\|GO:0051716_0.791\|GO:0043226_0.771\|GO:0005488_0.769\|GO:0005515_0.769\|GO:0071840_0.764\|GO:0016043_0.763\|GO:0043229_0.750\|GO:0008152_0.736\|GO:0044238_0.734\|GO:0043170_0.728\|GO:0043227_0.722\|GO:0006950_0.713\|GO:0043231_0.708\|GO:0006139_0.694\|GO:0033554_0.693\|GO:0065009_0.690\|GO:0003824_0.689\|GO:0050790_0.686\|GO:0090304_0.685\|GO:0006259_0.675\|GO:0006974_0.675\|GO:0006325_0.674\|GO:0006338_0.674\|GO:0140096_0.673\|GO:0016740_0.672\|GO:0006281_0.670\|GO:0006302_0.670\|GO:0010835_0.670\|GO:0016757_0.670\|GO:0016763_0.670\|GO:0051338_0.670\|GO:0140861_0.670\|GO:1990404_0.670\|GO:0060090_0.658\|GO:0030674_0.655\|GO:0003682_0.650\|GO:0042393_0.650\|GO:0140767_0.650\|GO:0140768_0.650\|GO:0043228_0.579\|GO:0043232_0.578\|GO:0005634_0.572\|GO:0005694_0.545\|GO:0000785_0.540\|GO:0090734_0.540	IPR019361+12-166_80-316+	—	PF10228+80-316+Histone_PARylation_factor_1	—	PTHR13386+12-166+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-42;445-447	1.000	43-444	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.584	50783.870	6.872	2.500	28.188	10.738	51.007	48.993	14.989	13.199	47.875

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	blue	420.221	185.106	219.522	201.618	255.680	250.979	340.045	316.470	196.770	1027.359	671.393

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	0.311	—	0.448	—	0.246	-2.514	—	—	—	—

No JSON data available for plots.

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