Hg_chrom9_TN10mRNA_18126
Organism: Heterodera glycines Gene Locus: chr9:8347588-8349686 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.047 | 1.337 | 1.273 | 0.603 | 1.25 | 0.897 | 0.595 | 0.75 | 1.5 | 1.284 | 1.061 | 1.324 | 1.736 | 0.577 | 1.224 | 1.0 | 0.779 | 0.606 | 0.769 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17136
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.105
|
0.045
|
0.184
|
0.501
|
0.323
|
0.392
|
0.141
|
0.395
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — | — |
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.950|GO:0005575_0.926|GO:0110165_0.924|GO:0009987_0.906|GO:0016020_0.878|GO:0005622_0.851|GO:0003674_0.840|GO:0065007_0.829|GO:0043226_0.825|GO:0071944_0.811|GO:0050789_0.803|GO:0005886_0.800|GO:0043229_0.798|GO:0043227_0.778|GO:0005737_0.772|GO:0008152_0.757|GO:0043231_0.751|GO:0044238_0.750|GO:0043170_0.738|GO:0019538_0.720|GO:0003824_0.699|GO:0016787_0.679|GO:0005773_0.672|GO:0140096_0.668|GO:0008233_0.660|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0012505_0.645|GO:0051179_0.578|GO:0051234_0.571|GO:0006810_0.568|GO:0050794_0.566|GO:0071840_0.541|GO:0016043_0.539
|
IPR038765+33-88+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
45164.370
|
5.778
|
-3.000
|
29.000
|
10.250
|
50.000
|
50.000
|
14.500
|
14.500
|
47.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
5.011
|
0.451
|
0.222
|
0.375
|
0.637
|
1.371
|
8.202
|
6.773
|
0.000
|
15.160
|
8.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.586
|
2.196
|
— | — | — | — | — | — |
No JSON data available for plots.