Hg_chrom9_TN10mRNA_18127
Organism: Heterodera glycines Gene Locus: chr9:8352624-8354631 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 0.74 | 1.495 | 1.098 | 1.061 | 1.088 | 0.442 | 0.928 | 1.533 | 1.29 | 0.844 | 2.184 | 2.063 | 0.918 | 1.083 | 1.099 | 0.739 | 0.643 | 0.612 | 0.468 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17137
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRFIYEPFEKSARRHRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.425
|
0.246
|
0.049
|
0.524
|
0.270
|
0.388
|
0.255
|
0.085
|
0.066
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — |
M9PD06.1 Ubiquitin carboxyl-terminal hydrolase 32 [Drosophila melanogaster]
|
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.872|GO:0003674_0.795|GO:0005575_0.786|GO:0110165_0.784|GO:0003824_0.676|GO:0005622_0.676|GO:0008152_0.657|GO:0044238_0.638|GO:0016020_0.632|GO:0016787_0.628|GO:0140096_0.627|GO:0043170_0.616|GO:0008233_0.610|GO:0065007_0.610|GO:0019538_0.603|GO:0009987_0.598|GO:0019783_0.596|GO:0101005_0.596|GO:0050789_0.586|GO:0005737_0.584|GO:0043226_0.571|GO:0043229_0.539|GO:0043227_0.510|GO:0043231_0.509
|
IPR001394+15-315+|IPR028889+1-377+|IPR038765+12-309+|IPR050185+16-314+
|
— |
PF00443+15-315+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+16-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
42924.280
|
4.825
|
-10.500
|
27.321
|
11.671
|
46.950
|
53.050
|
12.732
|
14.589
|
46.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
62.441
|
5.976
|
25.468
|
36.133
|
47.142
|
77.132
|
93.143
|
125.833
|
5.139
|
115.262
|
68.067
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.859
|
2.460
|
0.615
|
— |
0.723
|
— | — | — |
-4.602
|
— | — | — | — |
No JSON data available for plots.