Hg_chrom9_TN10mRNA_18129
Organism: Heterodera glycines Gene Locus: chr9:8358232-8360430 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.508 | 1.241 | 1.295 | 0.967 | 1.313 | 0.488 | 1.195 | 1.82 | 0.876 | 0.776 | 1.405 | 1.327 | 0.591 | 1.741 | 0.683 | 0.56 | 0.931 | 0.788 | 1.004 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17139
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
PEEKRKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.402
|
0.216
|
0.015
|
0.540
|
0.279
|
0.317
|
0.282
|
0.066
|
0.175
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013163
|
2.000
|
0.000
|
0.000
|
Hsc_gene_13859.t1;Hsc_gene_13864.t1;Hsc_gene_13866.t1;Hsc_gene_13869.t1
|
— |
O14617.1 AP-3 complex subunit delta-1 [Homo sapiens]
|
KAF7639491.1 AP-3 complex subunit delta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002100|GO:0003824|GO:0006886|GO:0008251|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.849|GO:0110165_0.829|GO:0008150_0.759|GO:0005622_0.754|GO:0016020_0.720|GO:0009987_0.695|GO:0005737_0.665|GO:0043226_0.632|GO:0043229_0.612|GO:0043227_0.605|GO:0043231_0.585
|
IPR002553+41-116+|IPR011989+11-120+|IPR016024+25-118+|IPR016193+187-268+|IPR017105+17-116+|IPR028883+187-261+
|
— |
PF01602+41-116+Adaptin_N_terminal_region|PF14437+187-261+MafB19-like_deaminase
|
— |
PTHR22781+17-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
9c5b_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
33840.670
|
7.949
|
6.500
|
28.669
|
11.604
|
48.464
|
51.536
|
16.041
|
12.628
|
46.758
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
314.925
|
384.146
|
221.101
|
150.598
|
133.220
|
110.461
|
108.778
|
198.004
|
173.405
|
757.877
|
507.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.028
|
-1.488
|
-0.445
|
— | — | — |
0.739
|
-0.722
|
— | — | — | — | — |
No JSON data available for plots.