Hg_chrom9_TN10mRNA_18131
Organism: Heterodera glycines Gene Locus: chr9:8373693-8375695 Feature type: polypeptideProtein Sequence
Length: 422
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.267 | 1.336 | 0.572 | 1.264 | 1.033 | 0.564 | 0.948 | 1.474 | 1.281 | 1.005 | 1.394 | 1.975 | 0.547 | 1.161 | 0.982 | 0.777 | 0.61 | 0.729 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17141
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.159
|
0.093
|
0.040
|
0.184
|
0.517
|
0.311
|
0.402
|
0.123
|
0.394
|
0.228
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000170
|
10.000
|
2.000
|
Hsc_gene_13868.t1;Hsc_gene_13881.t1
|
— | — |
O60139.2 Probable ubiquitin carboxyl-terminal hydrolase 4 [Schizosaccharomyces pombe 972h-]
|
KAI3410125.1 CSN-associated deubiquitinating enzyme Ubp12 [Globodera pallida]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.853|GO:0005575_0.791|GO:0110165_0.789|GO:0003674_0.763|GO:0005622_0.689|GO:0016020_0.653|GO:0008152_0.631|GO:0003824_0.621|GO:0043170_0.612|GO:0009987_0.604|GO:0016787_0.601|GO:0044238_0.601|GO:0043226_0.597|GO:0140096_0.590|GO:0065007_0.583|GO:0008233_0.581|GO:0019783_0.571|GO:0043229_0.571|GO:0101005_0.571|GO:0019538_0.570|GO:0005737_0.569|GO:0050789_0.557|GO:0043227_0.529
|
IPR001394+3-179+|IPR038765+3-109+|IPR050185+3-137+
|
— |
PF00443+3-179+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+3-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
47828.320
|
5.253
|
-7.000
|
29.147
|
11.137
|
50.237
|
49.763
|
14.218
|
14.929
|
46.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
18.607
|
1.937
|
4.558
|
10.349
|
8.078
|
9.103
|
19.681
|
9.225
|
0.000
|
57.804
|
33.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.286
|
1.296
|
— | — |
1.122
|
— |
1.237
|
— |
4.229
|
— | — | — |
No JSON data available for plots.