Hg_chrom9_TN10mRNA_18132
Organism: Heterodera glycines Gene Locus: chr9:8376525-8384166 Feature type: polypeptideProtein Sequence
Length: 1,221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.295 | 1.176 | 0.367 | 1.242 | 1.365 | 0.907 | 1.147 | 1.238 | 1.195 | 1.067 | 1.59 | 0.455 | 0.677 | 1.137 | 0.948 | 1.02 | 0.831 | 0.378 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17142
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.637
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKR,KRRK,RRKR,RRRR,KKKTKK,KKLGKKKKTNKKKCA,KRTTTTTATTTMAKKKGRM,RRHQQEVEEGTVVAPRQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.457
|
0.078
|
0.005
|
0.585
|
0.122
|
0.261
|
0.394
|
0.062
|
0.152
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013164
|
1.000
|
1.000
|
Hsc_gene_13869.t1
|
Hsc_gene_13864.t1;Hsc_gene_13866.t1;Hsc_gene_13869.t1;Hsc_gene_13870.t1
|
— |
O14617.1 AP-3 complex subunit delta-1 [Homo sapiens]
|
KAF7639491.1 AP-3 complex subunit delta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0015031|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.934|GO:0110165_0.929|GO:0005622_0.851|GO:0016020_0.849|GO:0008150_0.775|GO:0009987_0.736|GO:0043226_0.707|GO:0005737_0.695|GO:0043229_0.682|GO:0071944_0.652|GO:0043227_0.641|GO:0005886_0.631|GO:0043231_0.613|GO:0051179_0.572|GO:0051234_0.549|GO:0006810_0.540
|
IPR002553+41-592+|IPR010474+760-994_764-889_939-994+|IPR011989+11-603+|IPR016024+38-652+|IPR017105+11-1182_17-1157+
|
SM01354+760-994+
|
PF01602+41-592+Adaptin_N_terminal_region|PF06375+764-889_939-994+AP-3_complex_subunit_delta-1
|
G3DSA:1.25.10.10:FF:000251+22-603+AP-3_complex_subunit_delta
|
PTHR22781+17-1157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
609-1221
|
1.000
|
1-608
|
9c5b_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
134891.930
|
6.407
|
-2.000
|
28.829
|
6.962
|
52.580
|
47.420
|
14.906
|
13.923
|
50.532
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1486.378
|
1998.763
|
1106.498
|
1009.821
|
1131.953
|
1061.506
|
1615.682
|
862.668
|
1301.584
|
2231.633
|
1833.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.082
|
-1.122
|
— |
0.133
|
— |
0.616
|
-0.402
|
1.047
|
— | — | — | — | — |
No JSON data available for plots.