Hg_chrom9_TN10mRNA_18133
Organism: Heterodera glycines Gene Locus: chr9:8384341-8389889 Feature type: polypeptideProtein Sequence
Length: 618
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 0.978 | 0.353 | 0.893 | 1.079 | 1.369 | 1.059 | 1.456 | 1.474 | 1.181 | 0.539 | 1.999 | 1.079 | 0.653 | 1.189 | 1.086 | 1.22 | 1.079 | 0.871 | 0.904 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.543
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.089
|
0.083
|
0.019
|
0.142
|
0.302
|
0.171
|
0.104
|
0.058
|
0.880
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013165
|
1.000
|
1.000
|
Hsc_gene_13872.t1
|
Hsc_gene_13872.t1
|
— |
Q8SWR3.1 Sex peptide receptor [Drosophila melanogaster]
|
KAF7639492.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.967|GO:0009987_0.941|GO:0065007_0.896|GO:0050789_0.883|GO:0050794_0.855|GO:0003674_0.826|GO:0005575_0.818|GO:0110165_0.817|GO:0007154_0.792|GO:0023052_0.788|GO:0050896_0.785|GO:0016020_0.783|GO:0071944_0.783|GO:0005886_0.776|GO:0032501_0.722|GO:0051716_0.697|GO:0005488_0.654|GO:0007165_0.646|GO:0060089_0.642|GO:0038023_0.637|GO:0007186_0.577|GO:0006810_0.566|GO:0051179_0.566|GO:0051234_0.566
|
IPR000276+41-65_60-420_73-94_152-173_370-394+|IPR017452+56-436+|IPR053071+26-461+
|
— |
PF00001+60-420+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR47023+26-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-363;480-618
|
2.000
|
1-305;364-479
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
68602.800
|
8.189
|
15.000
|
20.712
|
11.003
|
45.307
|
54.693
|
12.298
|
8.414
|
49.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
405.554
|
716.703
|
553.246
|
638.690
|
243.335
|
132.536
|
279.122
|
557.704
|
416.217
|
291.634
|
345.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.604
|
-0.303
|
0.317
|
-1.422
|
-0.863
|
1.085
|
1.973
|
-0.857
|
— | — | — | — | — |
No JSON data available for plots.