Hg_chrom9_TN10mRNA_18134
Organism: Heterodera glycines Gene Locus: chr9:8402691-8403959 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.682 | 1.226 | 0.506 | 0.88 | 0.902 | 1.466 | 1.173 | 1.043 | 1.189 | 0.978 | 1.725 | 0.815 | 0.79 | 1.436 | 0.754 | 0.673 | 0.844 | 1.128 | 1.121 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17144
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.581
|
0.257
|
0.004
|
0.602
|
0.168
|
0.088
|
0.062
|
0.002
|
0.183
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001418
|
3.000
|
2.000
|
Hsc_gene_13911.t1;Hsc_gene_869.t1
|
Hsc_gene_13875.t1;Hsc_gene_13879.t1;Hsc_gene_13893.t1;Hsc_gene_13893.t2;Hsc_gene_13911.t1;Hsc_gene_13913.t1;Hsc_gene_22892.t1;Hsc_gene_25917.t1;Hsc_gene_869.t1;Hsc_gene_872.t1
|
— |
Q9JMK2.2 Casein kinase I isoform epsilon [Mus musculus]
|
KAH7729073.1 CK1/WORM6 protein kinase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.880|GO:0110165_0.873|GO:0005622_0.786|GO:0005737_0.714|GO:0008150_0.658|GO:0003674_0.645|GO:0003824_0.594|GO:0043226_0.578|GO:0043229_0.572|GO:0009987_0.562|GO:0016020_0.548|GO:0016740_0.535
|
IPR000719+16-288_16-304_17-246+|IPR011009+14-310+|IPR017441+22-44+|IPR050235+15-317+
|
SM00220+16-288+
|
PF00069+17-246+Protein_kinase_domain
|
— |
PTHR11909+15-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
314-341
|
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
37502.690
|
8.781
|
9.000
|
27.859
|
10.557
|
43.695
|
56.305
|
15.836
|
12.023
|
50.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
5138.036
|
37.218
|
144.815
|
384.896
|
773.123
|
20114.758
|
236.850
|
25204.361
|
0.000
|
4892.901
|
2795.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.725
|
3.232
|
1.522
|
0.975
|
4.715
|
-6.397
|
— |
-6.587
|
-13.055
|
9.445
|
— | — | — |
No JSON data available for plots.