Hg_chrom9_TN10mRNA_18135
Organism: Heterodera glycines Gene Locus: chr9:8404211-8405017 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.86 | 0.372 | 2.036 | 0.276 | 1.867 | 0.41 | 0.952 | 1.2 | 0.178 | 0.108 | 3.636 | 0.941 | 0.667 | 0.462 | 0.49 | 0.8 | 0.918 | 0.121 | 0.0 | 0.235 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17145
|
— | — |
2.889
|
3.000
|
3.000
|
1.000
|
3.000
|
3.000
|
3.000
|
3.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKDKHGKKDKKDKKKDA,KKEEATTGGDAEEKAKKKD,EKAKKKDKKGDGAAAADKKEEKRKDKHKSKEGKSDDSNRRSKKDKHGKKDKKDKKKD
|
— | — | — | — | — | — |
0.007
|
— | — |
0.544
|
0.493
|
0.227
|
0.315
|
0.176
|
0.045
|
0.055
|
0.020
|
0.145
|
0.537
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001419
|
2.000
|
3.000
|
Hsc_gene_13910.t1;Hsc_gene_22893.t1;Hsc_gene_25916.t1
|
Hsc_gene_13876.t1;Hsc_gene_13878.t1;Hsc_gene_13894.t1;Hsc_gene_13910.t1;Hsc_gene_22893.t1;Hsc_gene_868.t1;Hsc_gene_871.t1
|
— | — | — |
WP_340506062
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-125
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
13542.960
|
9.798
|
6.500
|
51.200
|
5.600
|
65.600
|
34.400
|
28.800
|
22.400
|
52.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
14479.257
|
62.150
|
232.450
|
592.985
|
1167.944
|
54056.298
|
256.684
|
55764.351
|
16.676
|
21284.420
|
12169.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.668
|
3.116
|
1.463
|
0.947
|
5.546
|
-7.708
|
— |
-7.616
|
-10.441
|
5.357
|
-4.027
|
— | — |
No JSON data available for plots.