Hg_chrom9_TN10mRNA_18137
Organism: Heterodera glycines Gene Locus: chr9:8407755-8409310 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 0.648 | 0.619 | 0.427 | 1.6 | 3.334 | 0.7 | 0.464 | 0.688 | 0.628 | 0.188 | 1.275 | 0.86 | 2.203 | 1.516 | 1.061 | 1.675 | 0.563 | 0.714 | 0.455 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_17147
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
3-42
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.439
|
0.140
|
0.007
|
0.709
|
0.144
|
0.140
|
0.145
|
0.017
|
0.044
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001417
|
4.000
|
1.000
|
Hsc_gene_13912.t1
|
Hsc_gene_13880.t1
|
— |
P42747.1 Ubiquitin-conjugating enzyme E2 14 [Arabidopsis thaliana]
|
KAI3412015.1 ubiquitin-conjugating enzyme E2 G1 [Globodera pallida]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.909|GO:0005575_0.834|GO:0110165_0.834|GO:0003674_0.765|GO:0005622_0.733|GO:0008152_0.721|GO:0043170_0.721|GO:0044238_0.680|GO:0019538_0.669|GO:0009987_0.646|GO:0016020_0.633|GO:0043226_0.591|GO:0003824_0.590|GO:0140096_0.590|GO:0004842_0.584|GO:0016740_0.584|GO:0016746_0.584|GO:0016755_0.584|GO:0019787_0.584|GO:0005737_0.564|GO:0043229_0.525|GO:0065007_0.524|GO:0043227_0.519|GO:0050789_0.517|GO:0009056_0.512|GO:0050794_0.506
|
IPR000608+32-193_37-177_45-187+|IPR016135+30-194_37-189+|IPR023313+107-122+|IPR050113+30-190+
|
SM00212+35-193+
|
PF00179+45-187+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+30-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;166-323
|
1.000
|
43-165
|
1pzv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
36088.600
|
4.506
|
-12.500
|
22.601
|
6.502
|
56.037
|
43.963
|
9.598
|
13.003
|
52.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1306.441
|
5.690
|
7.918
|
21.953
|
116.610
|
5480.321
|
34.620
|
6660.446
|
0.000
|
1092.846
|
624.484
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.814
|
1.584
|
2.379
|
5.568
|
-7.293
|
— |
-7.437
|
-25.863
|
5.313
|
— | — | — |
No JSON data available for plots.